PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01038666001
Common NameVIT_16s0098g00760
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 579aa    MW: 64685.1 Da    PI: 4.6747
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01038666001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.68.8e-5291361128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lp GfrF+Ptdeel+++yL+ k++g++ e+ +vi+e+d++k+ePwdLp  +++++++ ew+fF++rd+ky++g+r nrat++gyWkatg+d+
  GSVIVT01038666001   9 LPLGFRFRPTDEELITHYLRLKISGNDEEV-RVIREIDVCKWEPWDLPdlSEIRTNDMEWFFFCPRDRKYPNGHRLNRATAAGYWKATGRDR 99 
                        699************************998.99**************96448888999********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++s k++lvg+kktLvf++grap+g++t Wvmheyr+
  GSVIVT01038666001 100 QIKS-KTRLVGMKKTLVFHTGRAPHGKRTVWVMHEYRA 136
                        ****.999****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-604159IPR003441NAC domain
PROSITE profilePS5100556.1289159IPR003441NAC domain
PfamPF023651.1E-2610135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002230Biological Processpositive regulation of defense response to virus by host
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MAVLSFNSLP LGFRFRPTDE ELITHYLRLK ISGNDEEVRV IREIDVCKWE PWDLPDLSEI  60
RTNDMEWFFF CPRDRKYPNG HRLNRATAAG YWKATGRDRQ IKSKTRLVGM KKTLVFHTGR  120
APHGKRTVWV MHEYRATAKE LDGTHPGQAA FVLCRLFKKQ DEKAEGSNPD EIEPTVPSPT  180
PANSPEETEF EVALPQVAPV EKQEEEQPGF AEGCPGENPD EMTAESSVPV GFCSNPLNAY  240
DEEDSLAKLT AAEVDPSLQE DFGFFQDQML EQLDYQLFSP VHSQWHMGLE SYVSYPVTGN  300
FSNGHNGENE YGTNEPDPDV TEFLESVLKE NGSCSESDTV SQTQLDVEFD ASAVIIDNIK  360
TEALQEMETN ISAFKTTTGN SAVEYSGNMG FSHNNFGDDA FSVGSTVNQL DNLFNRFEES  420
SSYTNAVGSS DITGPVIKRR TRQPQIQSDA NNCGPQGTAR RRIRLQTKLE VRHACSMSRD  480
LNCKEEAEVG QASQSDTSGT TDENQKIEVK KVDQELKMSM SLLRFRSKYK VPSVFSKVPV  540
PPACHLIASS VSLLRVVGLV GLFVIFIGTW ICREYSVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-46816019169NAC domain-containing protein 19
3swm_B5e-46816019169NAC domain-containing protein 19
3swm_C5e-46816019169NAC domain-containing protein 19
3swm_D5e-46816019169NAC domain-containing protein 19
3swp_A5e-46816019169NAC domain-containing protein 19
3swp_B5e-46816019169NAC domain-containing protein 19
3swp_C5e-46816019169NAC domain-containing protein 19
3swp_D5e-46816019169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.39110.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3808160.0FQ380816.1 Vitis vinifera clone SS0ACG27YP05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010662939.10.0PREDICTED: NAC domain-containing protein 91
TrEMBLF6H7900.0F6H790_VITVI; Uncharacterized protein
STRINGVIT_16s0098g00760.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9409612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.26e-95TCV-interacting protein