PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01037903001 | ||||||||
Common Name | LOC100249018, VIT_03s0091g00210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | bHLH | ||||||||
Protein Properties | Length: 203aa MW: 21404.9 Da PI: 9.6689 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.4 | 0.00062 | 99 | 131 | 18 | 55 |
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ L++l+ + +K + a++L +A+ YI+ Lq GSVIVT01037903001 99 ERITALQQLVSPF-----GKTDTASVLHEAMGYIRFLQ 131 6788888988887.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.902 | 81 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0074 | 90 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.36E-4 | 91 | 135 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-10 | 91 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-7 | 95 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MLCFGGYQSE VGFAEPTKTP QKSGVTCSDS SSASSTNNTN INKASKSNKK RNGSGNMSVP 60 TSSGLAKAPA GGQRNSKKTK SENPTSGGHV KVKKEKLGER ITALQQLVSP FGKTDTASVL 120 HEAMGYIRFL QDQVQVLCSP YLQTLPSSAH MSEGGENGEE KSSKDLRSRG LCLVPVECTE 180 HVANNNGADY WSPAMANTSS KK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.1860 | 1e-177 | stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM452979 | 3e-79 | AM452979.2 Vitis vinifera contig VV78X015167.8, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002269988.1 | 1e-148 | PREDICTED: transcription factor bHLH113 isoform X3 | ||||
Swissprot | Q9LT67 | 1e-52 | BH113_ARATH; Transcription factor bHLH113 | ||||
TrEMBL | F6H6A3 | 1e-146 | F6H6A3_VITVI; Uncharacterized protein | ||||
STRING | VIT_03s0091g00210.t01 | 1e-147 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1342 | 13 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19500.1 | 7e-46 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01037903001 |
Entrez Gene | 100249018 |
Publications ? help Back to Top | |||
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