PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01037667001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 429aa    MW: 46947.7 Da    PI: 8.3671
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01037667001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92.1e-172875148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+ Ed +lv++v+++G g+W+++ +  g+ R++k+c++rw ++l
  GSVIVT01037667001 28 KGPWTAAEDAILVEYVTKHGEGNWNAVQKNSGLARCGKSCRLRWANHL 75
                       79******************************************9986 PP
2Myb_DNA-binding46.67.8e-1581124146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +g++++eE+  +++++++lG++ W++ a+ ++ gRt++++k++w++
  GSVIVT01037667001  81 KGSFSAEEERVILELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 124
                        799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5852375IPR017930Myb domain
SuperFamilySSF466891.14E-2926122IPR009057Homeodomain-like
SMARTSM007171.7E-132777IPR001005SANT/Myb domain
PfamPF002496.3E-152875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-232982IPR009057Homeodomain-like
CDDcd001673.14E-113075No hitNo description
PROSITE profilePS5129424.83576130IPR017930Myb domain
SMARTSM007178.6E-1580128IPR001005SANT/Myb domain
PfamPF002491.1E-1381124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-2583130IPR009057Homeodomain-like
CDDcd001679.24E-1183124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MVANSSGAGV EDRPENGGSD AGGVALKKGP WTAAEDAILV EYVTKHGEGN WNAVQKNSGL  60
ARCGKSCRLR WANHLRPNLK KGSFSAEEER VILELHAKLG NKWARMAAQL PGRTDNEIKN  120
YWNTRIKRRL RQGLPVYPQE VQNQSNTVNQ PNFQNPPYPQ SPCPPSQTLF SSSPQFKPAF  180
SSSLSLFDPI TTLSAHQTSP ILTPPYQRYK RSGDTGPDFP LPFSQASLPS PLPSSSLPNQ  240
FSHISPLQLN PVTFCQNSLP ILQTQFKFDQ MVPPVLDFSI NPELPSSQFS KKTHPYTADN  300
MKINSSSSNC GLLDELIGQA QAMVCNDSSR RQASFGSQEE KHMLNDFELF LSGSSTNPPF  360
VSGPQWADST SLQPSTVRLP PRQTMAGPLA PPLGTTSQEF ANNAAVEHVF DVQLGPLSFS  420
FIRDTIVP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-33261305108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130RIKRRLR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.293440.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4570370.0AM457037.2 Vitis vinifera contig VV78X080583.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278003.10.0PREDICTED: protein ODORANT1
TrEMBLF6HEP40.0F6HEP4_VITVI; Uncharacterized protein
STRINGVIT_19s0090g00590.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.25e-72myb domain protein 101