PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01037260001 | ||||||||
Common Name | LOC100265339, VIT_06s0009g03530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | HB-other | ||||||||
Protein Properties | Length: 510aa MW: 57653.4 Da PI: 6.2658 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.9 | 2e-19 | 20 | 75 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR+ t++q+++Le+++++++yp+++++ eLA+++gLte+q++ WF+ rR k+kk GSVIVT01037260001 20 KKRRLKTPSQVQALEKFYNEHKYPTESMKSELAEEIGLTEKQISGWFCHRRLKDKK 75 89****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-21 | 2 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.443 | 16 | 76 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-18 | 18 | 80 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.7E-20 | 18 | 80 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.1E-17 | 20 | 75 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.63E-18 | 20 | 75 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 510 aa Download sequence Send to blast |
MEESSEVHSE ENKICEEKNK KRRLKTPSQV QALEKFYNEH KYPTESMKSE LAEEIGLTEK 60 QISGWFCHRR LKDKKLLEDE AGANGRQDRS SGVIQDRGSG YRQDSCGSTK HGDYRHIDPR 120 EVESRRFYGQ EFSAGDLNYE HRSHYTGNFS GRGDTSSESS SDLQDRSGIV MPINTKGTQN 180 RGFVRPSGYL KVKGEIENVA ITAVKRQLGR HYREDGPPLG VEFQPLPPGA FESSIRDQDD 240 EPYYVGNSIM SQSPDNPGVP KPPSLSTRYE VCSSKLASQN SCMEEANFGT MHGFDSRDNY 300 SNRQLKQKGS FPNYSNLSPG WNFSKDMHED AAGETSFVNS NKNYEMRSNP GIEGMRLSSV 360 SNRRLHPYGG KVTSEQTDSW LHEYDDIRPK IVQQKEYLKS KPSNLILQQS GSCDDEGRGQ 420 LRNMAKMEEV CRERRAMREY SDPVGEKVQP TNEMRVAKRV RDESPPLDYA KKSSFSETPT 480 WGNQIKGSAM EMPSSFSEDE TAETSSSMD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 19 | 24 | KKRRLK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.17011 | 0.0 | bud| inflorescence| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ395635 | 0.0 | FQ395635.1 Vitis vinifera clone SS0AFA14YN23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002279963.2 | 0.0 | PREDICTED: uncharacterized protein LOC100265339 | ||||
TrEMBL | F6HA21 | 0.0 | F6HA21_VITVI; Uncharacterized protein | ||||
STRING | VIT_06s0009g03530.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8823 | 8 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03250.1 | 2e-89 | HB-other family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01037260001 |
Entrez Gene | 100265339 |