PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01036091001 | ||||||||
Common Name | LOC100263879, VIT_06s0080g00780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | NAC | ||||||||
Protein Properties | Length: 233aa MW: 26616.9 Da PI: 7.6584 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 153.3 | 1.1e-47 | 4 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrF Pt+eelv++yL+ k++gk+ e+++vi+++diy++eP++Lpk +ka++++w+fF++r++++a+g r++r+t+sgyWkatg GSVIVT01036091001 4 LPPGFRFYPTEEELVSFYLRMKLRGKRlQEISRVIPDIDIYELEPSHLPKhageVCKADTEQWFFFTPRQEREARGGRPSRTTESGYWKATG 95 79*************************5455677***************656765566788******************************* PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + v+s++++++g+kkt+vfykg+ap g+kt+W mheyr+ GSVIVT01036091001 96 SPSYVYSSDNRVIGVKKTMVFYKGKAPAGRKTKWKMHEYRA 136 ***************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-49 | 3 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.268 | 4 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-25 | 5 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MEDLPPGFRF YPTEEELVSF YLRMKLRGKR LQEISRVIPD IDIYELEPSH LPKHAGEVCK 60 ADTEQWFFFT PRQEREARGG RPSRTTESGY WKATGSPSYV YSSDNRVIGV KKTMVFYKGK 120 APAGRKTKWK MHEYRAIETD TTTLNSTTAI PKLRHEFTLS RVYVVSGSFR AFDRRPLGTV 180 VREETSQQDT QIMEKTSSSP ESSCSGGDHL HLQASPAPID DFPWDWDPLD GL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-35 | 4 | 163 | 20 | 166 | NAC domain-containing protein 19 |
3swm_B | 1e-35 | 4 | 163 | 20 | 166 | NAC domain-containing protein 19 |
3swm_C | 1e-35 | 4 | 163 | 20 | 166 | NAC domain-containing protein 19 |
3swm_D | 1e-35 | 4 | 163 | 20 | 166 | NAC domain-containing protein 19 |
3swp_A | 1e-35 | 4 | 163 | 20 | 166 | NAC domain-containing protein 19 |
3swp_B | 1e-35 | 4 | 163 | 20 | 166 | NAC domain-containing protein 19 |
3swp_C | 1e-35 | 4 | 163 | 20 | 166 | NAC domain-containing protein 19 |
3swp_D | 1e-35 | 4 | 163 | 20 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM443089 | 1e-164 | AM443089.2 Vitis vinifera contig VV78X230441.2, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002274253.1 | 1e-146 | PREDICTED: NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 4e-91 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A438HQB1 | 1e-145 | A0A438HQB1_VITVI; NAC domain-containing protein 90 | ||||
TrEMBL | F6HHE2 | 1e-145 | F6HHE2_VITVI; Uncharacterized protein | ||||
STRING | VIT_06s0080g00780.t01 | 1e-146 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2278 | 11 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 8e-90 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01036091001 |
Entrez Gene | 100263879 |
Publications ? help Back to Top | |||
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