PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01035331001

Common Name

VITISV_036981

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

C3H

Protein Properties

Length: 307aa MW: 34130.1 Da PI: 8.1615

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01035331001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.9	3.5e-08	114	134	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G Ck Gd+C FaHg GSVIVT01035331001 114 ACPEFRK-GNCKKGDSCEFAHG 134 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	8.1E-6	109	135	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.45	110	136	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.8E-5	114	136	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.5E-6	114	134	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.4	144	167	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	7.883	144	168	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MMIGEPTRSN PTVQVPPWDP YDDPTAGMGS PFPVSGAFSS LQRYLPSNEF GTESGDESET 60 VVDAFSCDQF RMFEFKVRRC ARGRSHDWTE CPYAHPGEKA RRRDPRKFHY SGTACPEFRK 120 GNCKKGDSCE FAHGVFECWL HPARYRTQPC KDGSGCRRRV CFFAHTPEQL RVLPQQSPRN 180 HGSAESYDGS PLRLAFDPNL QVGKAKMSPQ SWGVQMGSGF GSPRGSTLRP GFCSLPSTPT 240 RTPARSGLGG LDVWDKTCEE EPAMERVESG RDLRARIYAK ISKENSLDRD SSPSAPDFGW 300 VSELVK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.8567	0.0	bud\| cell culture\| flower\| fruit\| inflorescence\| pedicel\| root

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM459902	0.0	AM459902.1 Vitis vinifera contig VV78X135233.9, whole genome shotgun sequence.
GenBank	FQ392360	0.0	FQ392360.1 Vitis vinifera clone SS0AFA5YP18.
GenBank	FQ394117	0.0	FQ394117.1 Vitis vinifera clone SS0AFA22YI11.
GenBank	FQ395598	0.0	FQ395598.1 Vitis vinifera clone SS0AFA15YB16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002275926.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 23
Swissprot	O82199	1e-117	C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBL	A5BHR5	0.0	A5BHR5_VITVI; Uncharacterized protein
STRING	VIT_04s0008g00610.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1170	16	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	1e-119	C3H family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01035331001

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Swain S,Singh N,Nandi AK Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant. J. Biosci., 2015. 40(1): p. 137-46 [PMID:25740148] Singh N,Swain S,Singh A,Nandi AK AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling. Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333 [PMID:29327969]