PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035009001
Common NameVIT_05s0077g01120
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 479aa    MW: 54319.4 Da    PI: 6.6484
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035009001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS73.93e-231913262134
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPi 90 
                         e+Ll+ +e v ++++e+a+++L++    +s++++p+qR++ +f eAL+++++r++ ++  + p se+s + +++++    +    ++  P+
  GSVIVT01035009001 191 AEVLLASVEKVVNQQFEAASRMLNQCDYFSSSTRNPVQRVVYHFSEALREKIHRETGRIRFKSPRSEESFDPEESRMGLNPTllaNHQEVPF 282
                        5789999999********************************************666665444333333333333333333334556779** PP

               GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLas 134
                         +++ +t  q Ile +++++rvH iD++i  G+QW  L+q L s
  GSVIVT01035009001 283 SQVARFTGIQVILENAAEAKRVHLIDLEIRSGVQWTILMQLLQS 326
                        ****************************************9987 PP
2GRAS58.91.1e-18362456280373
               GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsv 370
                        e+r+  E +++g  i+n+va+ g+er+ r  +   Wr+ + ++G+ + +ls++   qa+l+ ++++ +   +++ ++++l++gW++ p++s+
  GSVIVT01035009001 362 ENRSITEYMYFGHGIRNIVAADGDERKVRSVKIDVWRAFFARFGMVETELSKSSLHQASLVAKEFAcGSSCTLDMNQKCLLIGWRGTPILSL 453
                        689999************************************************************9999********************** PP

               GRAS 371 SaW 373
                        SaW
  GSVIVT01035009001 454 SAW 456
                        *** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098514.317164478IPR005202Transcription factor GRAS
PfamPF035141.0E-20191326IPR005202Transcription factor GRAS
PfamPF035143.8E-16362456IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MICFRCVDHG FYHYGSAILG SSGGRKKGNQ TQFYGAGDGG ESANSDNLCS GFGFGFDQEN  60
ADDEGFLLSK YQQQEDEQQK QSFLDYEFLD DLHFDVKKKG CPFSSTSLEL LKNYRSGIRL  120
LNEEKLNEPK HDTASSEAAW RRLSTEEVMR VAGERFMQSF QSSDGISMLS HPFGLSFSGL  180
SEEESRDVRL AEVLLASVEK VVNQQFEAAS RMLNQCDYFS SSTRNPVQRV VYHFSEALRE  240
KIHRETGRIR FKSPRSEESF DPEESRMGLN PTLLANHQEV PFSQVARFTG IQVILENAAE  300
AKRVHLIDLE IRSGVQWTIL MQLLQSGMNA ALSFLILPLL EQHRGRKSRR QVEGCLFEPG  360
FENRSITEYM YFGHGIRNIV AADGDERKVR SVKIDVWRAF FARFGMVETE LSKSSLHQAS  420
LVAKEFACGS SCTLDMNQKC LLIGWRGTPI LSLSAWNFLR REKKGLEMWI RIQLTASF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4421860.0AM442186.2 Vitis vinifera contig VV78X206189.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLF6H7300.0F6H730_VITVI; Uncharacterized protein
STRINGVIT_05s0077g01120.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.18e-13GRAS family protein