PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01034563001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 441aa    MW: 47889.3 Da    PI: 8.7351
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01034563001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20253302255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  GSVIVT01034563001 253 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 302
                        7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-14253302IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-33253311IPR001471AP2/ERF domain
PROSITE profilePS5103225.712253310IPR001471AP2/ERF domain
SMARTSM003808.5E-37253316IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22253311IPR016177DNA-binding domain
PRINTSPR003671.2E-11254265IPR001471AP2/ERF domain
CDDcd000189.44E-15261312No hitNo description
PRINTSPR003671.2E-11276292IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MSRKGVTPQY PFESSIGLYS RWFTELSEGL AFRIESEYLY LDQRCSTGCV VYMCKLKVAN  60
PRDSGEYVRF RAAGGGNEEV VPPPPQQSEE PVPVVSETMY SGYSRASEMS AMVSALTHVV  120
SGQRAGDYGY ASGFVGAAGG VTSSFGSGGS GIYTSSSPLS AYSSSSGSGS ASGSASWVGQ  180
KRGRELEAAT QYSETVPRVY RGFGDFRVSH SESSSGATGT EETTNMLPPT TAIPATPSTE  240
PASNQESGER RRRYRGVRQR PWGKWAAEIR DPHKAARVWL GTFDTAEAAA RAYDEAALRF  300
RGNRAKLNFP ENVRLMPPLQ VSPATQLSIS GPPATQLPVS SSPPPFFQGQ ALQNPDIVRD  360
YWEYSQLLQS SGDFHGQQPT SLLEQMFYSQ SLASLQSSAS LSSPSISFSS FLYHIFIVKK  420
RNRSLKLEEK TKTHLHLCLV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-22252313163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248253ERRRRY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.249700.0flower| fruit| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4713780.0AM471378.1 Vitis vinifera contig VV78X137856.13, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002264797.20.0PREDICTED: ethylene-responsive transcription factor ABR1
TrEMBLF6GY540.0F6GY54_VITVI; Uncharacterized protein
STRINGVIT_18s0072g00260.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-17ethylene response factor 110