PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01034521001
Common NameLOC100259010, VIT_18s0072g00690
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family Trihelix
Protein Properties Length: 362aa    MW: 42048.3 Da    PI: 8.7491
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01034521001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix643.4e-201031732586
           trihelix  25 k........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                        k        +kk++W++vsk+m+erg  +sp+qC++k+++lnkryk++++  +++ +++++++ +++d ++
  GSVIVT01034521001 103 KkgrkyailQKKGKWKSVSKVMAERGHYVSPQQCEDKFNDLNKRYKRLNDVLGRGtSCQVVENPALLDMMD 173
                        2444566669*********************************************66999*9999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-17111199No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MIPGGAPYGG LDLQGATRIH HHQHPHNLHQ QHHSHSRQGT MNHSSIHHEV FPLTMGSMQD  60
CDQSISMADY NKGEKGKALT SDEDEPSFNE DAIDGHNDPN RGKKGRKYAI LQKKGKWKSV  120
SKVMAERGHY VSPQQCEDKF NDLNKRYKRL NDVLGRGTSC QVVENPALLD MMDHLTEKTK  180
EDVRKILSSK HLFYEEMCSY HNGNRLHLPP DPALQRSLQL ALRSRDEHDN RVYGMPVKRM  240
KQGQNQEDFS FGNPSNSQDC NRSPHPQSAH VDMNQVYPVG SAEDLLQKQW MRSRSLQLEE  300
QKLQIQEQML ELEKQRFKWQ RFCRKKDRDL DKLRMENERM KLENERMALE LKRKEMGASY  360
N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1313325KQRFKWQRFCRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4398600.0AM439860.2 Vitis vinifera contig VV78X267391.13, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002266272.10.0PREDICTED: uncharacterized protein LOC100259010
TrEMBLF6GY280.0F6GY28_VITVI; Uncharacterized protein
STRINGVIT_18s0072g00690.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27961329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-104sequence-specific DNA binding transcription factors