PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01034419001
Common NameVIT_10s0071g00270
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family B3
Protein Properties Length: 306aa    MW: 34272 Da    PI: 7.8673
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01034419001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3521.3e-16163259295
                        EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                 B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                        +k+l + dv+++gr+vlpkk ae++   ++ + +  l++ed + +  W++k++y  +++s++yv++ ++ +Fvk ++L+ gD +v +  ++ 
  GSVIVT01034419001 163 QKELRNTDVGNLGRIVLPKKDAEANlpPLVAKDGLVLQMEDmKYSVNWKFKYRYwpNNRSRMYVME-NTGNFVKMHDLQPGDLFVVY--KDe 251
                        68999**********************777778889999998888*********777777778888.*******************9..343 PP

                        SEE..EEE CS
                 B3  88 sefelvvk 95 
                        s++++ v+
  GSVIVT01034419001 252 SSGKYIVR 259
                        88877775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.2E-24161261IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-18161257IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.896162264IPR003340B3 DNA binding domain
SMARTSM010192.3E-11162264IPR003340B3 DNA binding domain
PfamPF023624.7E-13163259IPR003340B3 DNA binding domain
CDDcd100175.06E-22163259No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDAFFGHIPG GFGRDSVFHA GFMPIQAVFQ NPFMPTAVRA PPLSYNLSAP LSIEVAKRPE  60
MNVFSASQCP KIGNPSDISS SDSIHTQKML RLSMDVSSDR HEIVNLGASD KHELPLLWKN  120
NAPSVTLSDI INSSETRPGS SPPANIHEDD EEIKGKGWLM LVQKELRNTD VGNLGRIVLP  180
KKDAEANLPP LVAKDGLVLQ MEDMKYSVNW KFKYRYWPNN RSRMYVMENT GNFVKMHDLQ  240
PGDLFVVYKD ESSGKYIVRG KKAVKPAHAE DKDGSIHRHR VGEADRDWYR QIWPEQGTSI  300
QLGTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A1e-351602633106B3 domain-containing transcription factor FUS3
6j9b_D1e-351602633106B3 domain-containing transcription factor FUS3
6j9c_A1e-3516025711108B3 domain-containing transcription factor LEC2
6j9c_D1e-3516025711108B3 domain-containing transcription factor LEC2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.98900.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4808330.0AM480833.2 Vitis vinifera contig VV78X204508.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010656027.10.0PREDICTED: uncharacterized protein LOC100256682
TrEMBLD7TY210.0D7TY21_VITVI; Uncharacterized protein
STRINGVIT_10s0071g00270.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7881766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.13e-38B3 family protein