PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01034171001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 330aa    MW: 36359.2 Da    PI: 8.6391
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01034171001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.68.1e-1561107148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g WT++Ed+ l  av+ + g++Wk+Ia+ ++  R++ qc +rwqk+l
  GSVIVT01034171001  61 KGGWTPQEDDTLRTAVAYFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 107
                        688*****************************.************986 PP
2Myb_DNA-binding605.2e-19113159148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g+WT+eEd+++ ++v ++G+  W+ Ia+ ++ gR +kqc++rw+++l
  GSVIVT01034171001 113 KGPWTQEEDDKITELVSKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 159
                        79******************************.*************97 PP
3Myb_DNA-binding56.37.2e-18165208146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +++WT +E++ l +a+ ++G++ W+ Ia+ ++ gRt++++k++w++
  GSVIVT01034171001 165 KDAWTLDEELALMNAHSKHGNK-WAEIAKVLP-GRTDNSIKNHWNS 208
                        689*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.65156107IPR017930Myb domain
SuperFamilySSF466891.87E-1458114IPR009057Homeodomain-like
SMARTSM007175.0E-1260109IPR001005SANT/Myb domain
PfamPF002495.2E-1461107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2063114IPR009057Homeodomain-like
CDDcd001671.47E-1064107No hitNo description
PROSITE profilePS5129431.05108163IPR017930Myb domain
SuperFamilySSF466895.24E-32110206IPR009057Homeodomain-like
SMARTSM007171.0E-17112161IPR001005SANT/Myb domain
PfamPF002493.6E-18113159IPR001005SANT/Myb domain
CDDcd001673.30E-15115159No hitNo description
Gene3DG3DSA:1.10.10.608.6E-28115162IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-24163214IPR009057Homeodomain-like
PROSITE profilePS5129422.651164214IPR017930Myb domain
SMARTSM007173.0E-16164212IPR001005SANT/Myb domain
PfamPF002492.8E-16165208IPR001005SANT/Myb domain
CDDcd001675.28E-12167210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MADVKLEEEE CCVENKQLVT ASSSSLSEGS GSVTVKSPGI CSPATTSPSH RRTTGPIRRA  60
KGGWTPQEDD TLRTAVAYFK GKSWKKIAEF FPDRSEVQCL HRWQKVLNPE LVKGPWTQEE  120
DDKITELVSK YGPTKWSVIA KSLPGRIGKQ CRERWHNHLN PDIKKDAWTL DEELALMNAH  180
SKHGNKWAEI AKVLPGRTDN SIKNHWNSSL KKKLDFYLAT GKLPPVVKSG FQNGAKDTNR  240
TNAPGKLLGC SNKGSESTAQ TSSGTTDLCK LEEDSKDQLE SSAPLQDAGV SLSLRSAGSM  300
VISMKVKLLE HPCSLEFQPM ILCTMNHQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-70602145159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-70602145159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.53331e-163bud
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed both in proliferating and maturing stages of leaves. {ECO:0000269|PubMed:26069325}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4251201e-161AM425120.1 Vitis vinifera contig VV78X113340.17, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010654284.10.0PREDICTED: uncharacterized protein LOC100256181 isoform X1
SwissprotQ8H1P91e-134MB3R3_ARATH; Transcription factor MYB3R-3
TrEMBLF6HLC50.0F6HLC5_VITVI; Uncharacterized protein
STRINGVIT_08s0007g00360.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.21e-130myb domain protein 3r-3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]