PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033316001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 620aa    MW: 67981.2 Da    PI: 6.3464
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033316001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.52e-07222242526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C++f++ G C++Gd C +aHg
  GSVIVT01033316001 222 PCPDFRK-GACRRGDMCEYAHG 242
                        8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5029715.72457133IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0025787IPR002110Ankyrin repeat
PfamPF127961.3E-857124IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.18E-1457135IPR020683Ankyrin repeat-containing domain
CDDcd002041.71E-759135No hitNo description
Gene3DG3DSA:1.25.40.201.1E-1459136IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.62192127IPR002110Ankyrin repeat
SMARTSM002480.001792124IPR002110Ankyrin repeat
SMARTSM003564.0E-6217243IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582222244IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4222244IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-5222242IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4250280IPR000571Zinc finger, CCCH-type
SMARTSM0035625252275IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.136252276IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MNHLTVVTED AFASLLELAA NNDFGRFKQS IEREPSGVDE IGQWYGRQKG SKQMVLEYRT  60
PLMVAATYGS IDVMKLILSL SDSDVNRFCG LDKSTALHCA ASGGSVNAVD VVKLLLLVGA  120
DPNSLDANGH RPVDVLVVPP KLQDLNDLPI SCASEKKEYP VDPSLPDIKN SIYATDEFRM  180
FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC VPCPDFRKGA CRRGDMCEYA  240
HGVFECWLHP AQYRTRLCKD GTNCNRRVCF FAHTTEELRP LYMSTGSAVP SPRPSSSTAT  300
AMDFATAMNL IPGSPSSVSV MSPSPFTPPL SPSANGVSHS SMGWAQPNVP TLHLPGSNLQ  360
SSRLRSSLNA RDIPAEDINL MLDFDIQQHQ LLNELSCLSQ PCVNSNSLNR SGRSKTLTPS  420
NLDELFSAES SSPRYSDQAL ASAVYSPTHK SAVLNQFQQQ QSMMSPRSME PISPMSSRAS  480
MFAQREKQQQ QQFRSLSSRD LGSNSSAIVG SPINSWSKWG SSNVKPDWAM NANELGGHRR  540
SNSFELGNNG EEPDLSWVQS LVKESPTETK EKAATPALDT AEASSSSDGS NLNSQIESID  600
HAVLGAWLEQ MQLDQLVAQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.68580.0cell culture| flower| fruit| inflorescence| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4835050.0AM483505.2 Vitis vinifera contig VV78X135780.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022745710.10.0zinc finger CCCH domain-containing protein 30-like
RefseqXP_022745711.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A438JL970.0A0A438JL97_VITVI; Zinc finger CCCH domain-containing protein 30
STRINGXP_009340157.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]