PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033313001
Common NameVIT_08s0007g08250
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NF-YA
Protein Properties Length: 355aa    MW: 39131.6 Da    PI: 8.6665
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033313001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.87.7e-33175231158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+Rg+gGrF
  GSVIVT01033313001 175 EEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKVRKPYLHESRHQHAMRRARGCGGRF 231
                        69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.3E-37173234IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.466174234IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.4E-28176231IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.9E-24177199IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860179199IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.9E-24208231IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MHKQTERKNQ PESKADSNNP YSICSQPWWR GLGNDVISPD VLGESSPNSA SAEHPNGGVG  60
TIAIKSRAKV VTDNGNDPEK EMKITLASQS DGSCGQEQKH PQQAVSMMPM TMAEYHLAPP  120
SQLELVGHSI ACASYPYSEP YYTGVIPAYG PQGLVQSQFL GVNVARMALP IEMAEEPVYV  180
NAKQYHGILR RRQSRAKAEL EKKLIKVRKP YLHESRHQHA MRRARGCGGR FLNTKKLDSN  240
ASYDMPDKGS DPDVNLSTRP ISSSVSESLP SNSSRNEDSP TSHLDARGPS VQELHNRQIA  300
SHGNGNSCYP HNQGFQLSTY HSLKDDRVEE GDHAGRQHER ILVNRAPHRA LTIK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-21175239266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.19400.0bud| cell culture| flower| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3790110.0FQ379011.1 Vitis vinifera clone SS0AEB11YL19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007028810.21e-140PREDICTED: nuclear transcription factor Y subunit A-1
TrEMBLD7THZ00.0D7THZ0_VITVI; Uncharacterized protein
STRINGVIT_08s0007g08250.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6801672
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.34e-50nuclear factor Y, subunit A1