PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033067001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MIKC_MADS
Protein Properties Length: 206aa    MW: 23495.2 Da    PI: 10.1666
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033067001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.83.3e-29959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krienk nrqvtfskRr g++KKA+ELS+LCd++ a+iifs +g+lye++s
  GSVIVT01033067001  9 KRIENKNNRQVTFSKRRSGMMKKAHELSILCDVDLALIIFSARGRLYEFCS 59
                       79***********************************************96 PP
2K-box44.94.9e-161011712999
              K-box  29 enLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                        + L+    ++ G  +e+L l eL qLeq+L+  l++ R +K++l++e i  l++k kel+e++++++k+++
  GSVIVT01033067001 101 DLLKIVESQVEGPRIEQLRLSELSQLEQKLDGMLRQTRRRKTQLMMEAIACLKEKVKELNEQKQQMEKMIA 171
                        6778888999********************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.034161IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-38160IPR002100Transcription factor, MADS-box
CDDcd002654.56E-38278No hitNo description
SuperFamilySSF554554.84E-30275IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-29323IPR002100Transcription factor, MADS-box
PfamPF003198.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.62586176IPR002487Transcription factor, K-box
PfamPF014867.6E-11107170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MGRGKFQLKR IENKNNRQVT FSKRRSGMMK KAHELSILCD VDLALIIFSA RGRLYEFCSG  60
NSLRNIIESY LQISRDAEAN VGSSSHEAKQ KRYPVRWAGA DLLKIVESQV EGPRIEQLRL  120
SELSQLEQKL DGMLRQTRRR KTQLMMEAIA CLKEKVKELN EQKQQMEKMI AAAESKDALQ  180
HEDLVMEQAG NNSKPPPQNV VLQLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-19192191Myocyte-specific enhancer factor 2B
1tqe_Q2e-19192191Myocyte-specific enhancer factor 2B
1tqe_R2e-19192191Myocyte-specific enhancer factor 2B
1tqe_S2e-19192191Myocyte-specific enhancer factor 2B
6c9l_A2e-19192191Myocyte-specific enhancer factor 2B
6c9l_B2e-19192191Myocyte-specific enhancer factor 2B
6c9l_C2e-19192191Myocyte-specific enhancer factor 2B
6c9l_D2e-19192191Myocyte-specific enhancer factor 2B
6c9l_E2e-19192191Myocyte-specific enhancer factor 2B
6c9l_F2e-19192191Myocyte-specific enhancer factor 2B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141TRRRKT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.116990.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4286006e-96AM428600.2 Vitis vinifera contig VV78X248683.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271169.11e-149PREDICTED: truncated transcription factor CAULIFLOWER A isoform X1
TrEMBLA0A438JDD57e-97A0A438JDD5_VITVI; Uncharacterized protein
STRINGEOY028372e-56(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-33AGAMOUS-like 8