PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033046001
Common NameLOC100263422, VIT_14s0068g01610
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 669aa    MW: 74005.7 Da    PI: 6.1774
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033046001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS431.27.8e-1323036671374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal..ppsetseknsseelaalklfsevsPi 90 
                        lv+ Ll+cAeav+++d  la+++L +l+  ++p gd+mqR+a++fteAL+arla + +   ++   +p +  + ns e l++++++++++P+
  GSVIVT01033046001 303 LVHFLLACAEAVAKEDYMLARRYLHHLNRVVTPLGDSMQRVASCFTEALSARLAATLTPKPSTSttKPFNPFPPNSLEILKIYQILYQACPY 394
                        6899**************************************************943322222201333333456***************** PP

               GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                        +kf+h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg     s e+++etg+ L+++A++l+vpfef++ v
  GSVIVT01033046001 395 IKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFIQALAARPGGAPFLRITGVGC----SPESVRETGRCLTELAHSLHVPFEFHP-V 481
                        ***********************************************************....9**************************.7 PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                         ++ledl++++++ + gEalaVn++ +lhr++  +  l     ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a+
  GSVIVT01033046001 482 GEELEDLKPHMFNRRVGEALAVNSANRLHRVP--TNFL----GNLLAMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDAT 567
                        *******************************9..4444....46************************************************ PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                        +p++s +r+k+E+ ++++ i+n+vacegaer++rhe+lekWr+ +e  GF+ vpls +a++q k ll  ++ dgyr+ e++g+l+lgW+dr+
  GSVIVT01033046001 568 FPPDSAQRAKLEQYIFAPVIRNIVACEGAERVMRHERLEKWRKLMEGKGFQGVPLSANAVTQSKILLGLYSCDGYRLTEDKGCLLLGWQDRA 659
                        ******************************************************************************************** PP

               GRAS 367 LvsvSaWr 374
                        ++++SaWr
  GSVIVT01033046001 660 ILAASAWR 667
                        *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.402277647IPR005202Transcription factor GRAS
PfamPF035142.7E-129303667IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MINSLCGSMG SLNSESSCTK LQQPTSPNKS ILESRKAPLS SDLESNSLAP SSLNLHGLKF  60
DVDGDAEVQS PDSSMWEAFF TDHFDSDFMI SSPVRSSPMN YNYNHVQSMQ GQSLLGCSPP  120
RNSSQLGSFS STHKGKGQSP LHKVFNSPTY QYIQPDTLSL PPLDSLLDDY QRDGVGASSY  180
PMMKIPAVGI SGASSLAQYL DMPITIHPTA LDLPLQNTWR FSGPVSESSA TGGSQLTQEK  240
DMYQMGSMSS TASLSQQLQE EHQQEQQLQQ KQQQLQEIQN PNHGLMVPHP LGSEQEHDSG  300
LQLVHFLLAC AEAVAKEDYM LARRYLHHLN RVVTPLGDSM QRVASCFTEA LSARLAATLT  360
PKPSTSTTKP FNPFPPNSLE ILKIYQILYQ ACPYIKFAHF TANQAIFEAF EAEERVHVID  420
LDILQGYQWP AFIQALAARP GGAPFLRITG VGCSPESVRE TGRCLTELAH SLHVPFEFHP  480
VGEELEDLKP HMFNRRVGEA LAVNSANRLH RVPTNFLGNL LAMIRDQAPN IVTIVEQEAS  540
HNGPYFLGRF LEALHYYSAI FDSLDATFPP DSAQRAKLEQ YIFAPVIRNI VACEGAERVM  600
RHERLEKWRK LMEGKGFQGV PLSANAVTQS KILLGLYSCD GYRLTEDKGC LLLGWQDRAI  660
LAASAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-9531066625377Protein SCARECROW
5b3h_D3e-9531066625377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4656120.0AM465612.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X190796.4, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002274834.20.0PREDICTED: scarecrow-like protein 21
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A438JCX50.0A0A438JCX5_VITVI; DELLA protein GAI1
TrEMBLD7SVL90.0D7SVL9_VITVI; Uncharacterized protein
STRINGVIT_14s0068g01610.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP53661322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-97RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]