PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01033032001 | ||||||||
Common Name | LOC100256653, VIT_14s0068g01490, VITISV_038623 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | NAC | ||||||||
Protein Properties | Length: 163aa MW: 18617.7 Da PI: 10.5263 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 129.5 | 2.6e-40 | 4 | 125 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lp GfrFhPtdeelvv+yLk+k+ + +l++ +vi+e+d++ ++PwdLp v +++ yfFs+ + g++ +r+t gyWka gkd ++ GSVIVT01033032001 4 LPIGFRFHPTDEELVVHYLKRKALSFPLPA-SVIPEFDVFLTNPWDLPGDV---KERRYFFSSGKG---FGNKCRRVTGCGYWKAIGKDIQI 88 699***************************.99***************554...346799999766...478999***************** PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ ++++vg+k+tLvfy+g+ g++t+Wvmheyrl GSVIVT01033032001 89 VASgSSRAVGMKRTLVFYEGKLGAGTRTQWVMHEYRL 125 *9867788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-47 | 2 | 153 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.729 | 4 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-25 | 5 | 125 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MVKLPIGFRF HPTDEELVVH YLKRKALSFP LPASVIPEFD VFLTNPWDLP GDVKERRYFF 60 SSGKGFGNKC RRVTGCGYWK AIGKDIQIVA SGSSRAVGMK RTLVFYEGKL GAGTRTQWVM 120 HEYRLVGLGT APSSTQKCVE EMEDWVVYRM FQKRRRPKRH GL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-36 | 2 | 154 | 13 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 151 | 158 | QKRRRPKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.297 | 0.0 | bud| flower| fruit| inflorescence| pedicel |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ389007 | 0.0 | FQ389007.1 Vitis vinifera clone SS0AEB21YC17. | |||
GenBank | FQ395810 | 0.0 | FQ395810.1 Vitis vinifera clone SS0AFA13YO23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002273649.1 | 1e-119 | PREDICTED: NAC domain-containing protein 83 | ||||
Swissprot | Q9FY93 | 1e-52 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | A0A438JD27 | 1e-117 | A0A438JD27_VITVI; NAC domain-containing protein 83 | ||||
TrEMBL | A5AMY1 | 1e-117 | A5AMY1_VITVI; Uncharacterized protein | ||||
STRING | VIT_14s0068g01490.t01 | 1e-118 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP11796 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 5e-55 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01033032001 |
Entrez Gene | 100256653 |
Publications ? help Back to Top | |||
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