PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01032746001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

ERF

Protein Properties

Length: 1636aa MW: 187382 Da PI: 6.7022

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01032746001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.5	8.1e-19	63	113	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +gy+GVr++ +g+WvAeIr+p + r r +lg+f ta eAa a+++a+++++g GSVIVT01032746001 63 CGYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTAIEAALAYDEAARAMYG 113 79***999.******8...3.35**********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	8.77E-30	63	122	No hit	No description
Pfam	PF00847	5.0E-13	63	113	IPR001471	AP2/ERF domain
SMART	SM00380	1.7E-35	64	127	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.667	64	121	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.18E-19	64	121	IPR016177	DNA-binding domain
PRINTS	PR00367	2.0E-8	65	76	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.4E-30	65	122	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.0E-8	87	103	IPR001471	AP2/ERF domain
SuperFamily	SSF52540	1.81E-30	999	1263	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Gene3D	G3DSA:3.40.50.300	9.1E-9	1006	1230	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00487	9.6E-16	1006	1241	IPR014001	Helicase superfamily 1/2, ATP-binding domain
Pfam	PF00176	6.0E-17	1014	1284	IPR000330	SNF2-related, N-terminal domain
PROSITE profile	PS51192	14.483	1035	1236	IPR014001	Helicase superfamily 1/2, ATP-binding domain
CDD	cd00046	8.70E-7	1043	1218	No hit	No description
SuperFamily	SSF52540	1.08E-35	1181	1239	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Gene3D	G3DSA:3.40.50.300	4.8E-13	1382	1521	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SuperFamily	SSF52540	1.08E-35	1384	1550	IPR027417	P-loop containing nucleoside triphosphate hydrolase
CDD	cd00079	1.00E-15	1384	1520	No hit	No description
PROSITE profile	PS51194	12.162	1401	1588	IPR001650	Helicase, C-terminal
Pfam	PF00271	6.3E-13	1405	1511	IPR001650	Helicase, C-terminal
SMART	SM00490	1.8E-10	1427	1512	IPR001650	Helicase, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 1636 aa Download sequence Send to blast
MSSGVIERKR KSRSRRSGPN SVAETLARWK QYNDILDSVR KAPAKGSKKG CMKGKGGPEN 60 SICGYRGVRQ RTWGKWVAEI REPNRGSRLW LGTFPTAIEA ALAYDEAARA MYGSSARLNL 120 PNYTTSLKDS SSAPTTSVSD STTTTSNYSE VCAYEDSKKP VLPSIKHEKN GHSLDAMYFK 180 NEDGGQDFLE GFPMDEMFDV DEFLRAIDSD PLASYGTRQE LGHDSGQVGS FETDNMQWEK 240 PTDLSYQLQN PDAKLLGSLN HMEQVPSDFD YCYGFLQPGK QLDPSSPESG FTLAVFSVLQ 300 VYHLIPFAAV NIEEIELTLE TICGRGIYVK TSIHFMHTRN LCRNQHPFHA HPFEAFYFGS 360 WQAIELMRIE DGTVALHLAE SEYVIEEKSP IPNLRIRPRK ATLSDCTCFL RPGTEITVLW 420 TLQQSESSDE ENREPVWIDA KISSIERRPH EPECSCQFFV NFYITQDPLG TEKGTLSKDI 480 SVVELDQISI LQKLGKYPCE DEHYRWKFSE DCSLLQRTKL FLGKFSSDLS WLVVTSVLKQ 540 AVFDVRSVQN RIVYQIVGGD HDKVSLNAVN FRVDNGISTP VIFPFVPADT IEADPLNGTN 600 EAGPLPFCDI VDLRRSKRRN VQPDRFFSLG GFSESDIGSV RAGIHKVDYW RKEEMPLALP 660 DEGDVHSIFS EKHIIDYEKG AHSLQIDSYE DFLVCKSKDR SREVKPILAA QNEDQHQFAI 720 VPVPLIIEPI AHGEDHLHDE TPWNESGEIG EISPKYYCTN GVPKLQRKNM SDLYMEVESR 780 WEGKGPIRKL RRKRGFTIRT KTESYGEVRP HKKRPFSEPG YKEVIEAYMK NIESTINKEQ 840 PLVIDQWKEL QVRNDLNQRR DCNSPSSVGD QEESSETEML WREMEFSIAS SYLLEENEGS 900 NVEVLKEVVQ ESSNISEQVC QHEYILDEEI GVLCQLCGFV STEIKDVSPP FFQPTGWITN 960 REWRDEENSK RKQAENDGFN LFSIPASSDT PLSEGNDNVW ALVPDLRKKL RLHQKKAFEF 1020 LWKNIAGSMV PALMEQEVKR RGGCVISHSP GAGKTFLVIS FLVSYLKLFP GKRPLVLAPK 1080 TTLYTWYKEI IKWKVPVPVY QIHGCRTYRY EIYKHKVETS PGIPRPNQDV MHVLDCLEKI 1140 QKWHAHPSIL LMGYTSFLSL MREDSKFIHR RYMGEVLRQS PGILVLDEGH NPRSTGSRLR 1200 KALMKVKTNL RILLSGTLFQ NNFSEYFNTL CLARPKFVNE VLRELDPKFK RNKNRRKRRY 1260 SSTESRARKF FTDEIAKRIN SNVPEEQIEG LNMLRNLTSK FIDVYEGGSS DNLPGLQVYT 1320 LLMKSTTIQQ QFLSKLQKKK DEYKGYPLEL ELLVTLGSIH PWLITTAACA DKYFSREELL 1380 ELKKHKDDVK KGSKVKFVLS LVNRCIIRKE KILIFCHNIS PINLFVDIFD KLYKWKKGED 1440 VLVLQGDLEL FERGRVMDQF EEPGGASKVL LASITACAEG ISLTAASRVI LLDTEWNPSK 1500 QKQAVARAFR PGQERVVYVY QLLETDTLEE EKNSRTNWKE WVSSMIFSEA FVEDPSCWQA 1560 EKIEDDLLRE IVEEDWAKSI HMIMKNEKAS NGLIRDVVKE MSLQNIQHIM VIMCVYCIIS 1620 MYNMHNFVCI QNSLV*

Sequence ? help Back to Top

Protein Sequence Length: 1636 aa Download sequence Send to blast

MSSGVIERKR KSRSRRSGPN SVAETLARWK QYNDILDSVR KAPAKGSKKG CMKGKGGPEN  60
SICGYRGVRQ RTWGKWVAEI REPNRGSRLW LGTFPTAIEA ALAYDEAARA MYGSSARLNL  120
PNYTTSLKDS SSAPTTSVSD STTTTSNYSE VCAYEDSKKP VLPSIKHEKN GHSLDAMYFK  180
NEDGGQDFLE GFPMDEMFDV DEFLRAIDSD PLASYGTRQE LGHDSGQVGS FETDNMQWEK  240
PTDLSYQLQN PDAKLLGSLN HMEQVPSDFD YCYGFLQPGK QLDPSSPESG FTLAVFSVLQ  300
VYHLIPFAAV NIEEIELTLE TICGRGIYVK TSIHFMHTRN LCRNQHPFHA HPFEAFYFGS  360
WQAIELMRIE DGTVALHLAE SEYVIEEKSP IPNLRIRPRK ATLSDCTCFL RPGTEITVLW  420
TLQQSESSDE ENREPVWIDA KISSIERRPH EPECSCQFFV NFYITQDPLG TEKGTLSKDI  480
SVVELDQISI LQKLGKYPCE DEHYRWKFSE DCSLLQRTKL FLGKFSSDLS WLVVTSVLKQ  540
AVFDVRSVQN RIVYQIVGGD HDKVSLNAVN FRVDNGISTP VIFPFVPADT IEADPLNGTN  600
EAGPLPFCDI VDLRRSKRRN VQPDRFFSLG GFSESDIGSV RAGIHKVDYW RKEEMPLALP  660
DEGDVHSIFS EKHIIDYEKG AHSLQIDSYE DFLVCKSKDR SREVKPILAA QNEDQHQFAI  720
VPVPLIIEPI AHGEDHLHDE TPWNESGEIG EISPKYYCTN GVPKLQRKNM SDLYMEVESR  780
WEGKGPIRKL RRKRGFTIRT KTESYGEVRP HKKRPFSEPG YKEVIEAYMK NIESTINKEQ  840
PLVIDQWKEL QVRNDLNQRR DCNSPSSVGD QEESSETEML WREMEFSIAS SYLLEENEGS  900
NVEVLKEVVQ ESSNISEQVC QHEYILDEEI GVLCQLCGFV STEIKDVSPP FFQPTGWITN  960
REWRDEENSK RKQAENDGFN LFSIPASSDT PLSEGNDNVW ALVPDLRKKL RLHQKKAFEF  1020
LWKNIAGSMV PALMEQEVKR RGGCVISHSP GAGKTFLVIS FLVSYLKLFP GKRPLVLAPK  1080
TTLYTWYKEI IKWKVPVPVY QIHGCRTYRY EIYKHKVETS PGIPRPNQDV MHVLDCLEKI  1140
QKWHAHPSIL LMGYTSFLSL MREDSKFIHR RYMGEVLRQS PGILVLDEGH NPRSTGSRLR  1200
KALMKVKTNL RILLSGTLFQ NNFSEYFNTL CLARPKFVNE VLRELDPKFK RNKNRRKRRY  1260
SSTESRARKF FTDEIAKRIN SNVPEEQIEG LNMLRNLTSK FIDVYEGGSS DNLPGLQVYT  1320
LLMKSTTIQQ QFLSKLQKKK DEYKGYPLEL ELLVTLGSIH PWLITTAACA DKYFSREELL  1380
ELKKHKDDVK KGSKVKFVLS LVNRCIIRKE KILIFCHNIS PINLFVDIFD KLYKWKKGED  1440
VLVLQGDLEL FERGRVMDQF EEPGGASKVL LASITACAEG ISLTAASRVI LLDTEWNPSK  1500
QKQAVARAFR PGQERVVYVY QLLETDTLEE EKNSRTNWKE WVSSMIFSEA FVEDPSCWQA  1560
EKIEDDLLRE IVEEDWAKSI HMIMKNEKAS NGLIRDVVKE MSLQNIQHIM VIMCVYCIIS  1620
MYNMHNFVCI QNSLV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1z3i_X	4e-29	975	1549	17	551	similar to RAD54-like
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable chromatin remodeling factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM482763	0.0	AM482763.2 Vitis vinifera contig VV78X093132.14, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010658217.1	0.0	PREDICTED: SNF2 domain-containing protein CLASSY 1 isoform X1
Refseq	XP_019080057.1	0.0	PREDICTED: SNF2 domain-containing protein CLASSY 1 isoform X1
Swissprot	F4K493	0.0	CLSY2_ARATH; SNF2 domain-containing protein CLASSY 2
TrEMBL	F6HCA3	0.0	F6HCA3_VITVI; Uncharacterized protein
STRING	VIT_13s0067g01950.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40340.1	2e-34	ERF family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01032746001

Publications ? help Back to Top
Kanno T, et al. Involvement of putative SNF2 chromatin remodeling protein DRD1 in RNA-directed DNA methylation. Curr. Biol., 2004. 14(9): p. 801-5 [PMID:15120073] Smith LM, et al. An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis. Plant Cell, 2007. 19(5): p. 1507-21 [PMID:17526749] Xu R,Zhang S,Huang J,Zheng C Genome-wide comparative in silico analysis of the RNA helicase gene family in Zea mays and Glycine max: a comparison with Arabidopsis and Oryza sativa. PLoS ONE, 2013. 8(11): p. e78982 [PMID:24265739]