PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01032592001 | ||||||||
Common Name | VIT_14s0066g02460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | LBD | ||||||||
Protein Properties | Length: 244aa MW: 27824 Da PI: 8.8496 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.9 | 4.5e-40 | 10 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCaaCk++rrkC+++C+lapyfpa++pk f+n+h+lFG+sn++k+lk++++++++dam+s++ye+++r+r Pv+G++g+i++l qq++q+ GSVIVT01032592001 10 ACAACKYQRRKCSDQCPLAPYFPASNPKLFQNAHRLFGVSNMMKILKKVNDDQKHDAMQSIIYESNMRQRFPVHGCCGIIRQLYQQVQQTMD 101 7******************************************************************************************* PP DUF260 93 elallke 99 el ++++ GSVIVT01032592001 102 ELCHVNA 108 *998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.34 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.6E-38 | 10 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0007016 | developmental stage | whole plant flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MTVKGGTSQA CAACKYQRRK CSDQCPLAPY FPASNPKLFQ NAHRLFGVSN MMKILKKVND 60 DQKHDAMQSI IYESNMRQRF PVHGCCGIIR QLYQQVQQTM DELCHVNARL HMIREQQFHC 120 QNNNNNLPLP PTPSQHLQQP MIGSNIIPVY PYQFDQQHHH PPPPPVLRTP VAHVGPSNQL 180 LTKENKGSHV EINKKTERLL WGQPDFDNIN GNSLMACLLQ FFTSQVPFLL QMGVPQHMIS 240 YNC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-24 | 6 | 103 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-24 | 6 | 103 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM461321 | 0.0 | AM461321.2 Vitis vinifera contig VV78X198049.32, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010661022.2 | 1e-157 | PREDICTED: LOB domain-containing protein 27 | ||||
TrEMBL | A0A438CL66 | 0.0 | A0A438CL66_VITVI; LOB domain-containing protein 27 | ||||
STRING | VIT_14s0066g02460.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 3e-44 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01032592001 |