PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01032251001
Common NameLOC100263801, VIT_11s0065g00310
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ARF
Protein Properties Length: 1035aa    MW: 114004 Da    PI: 6.4249
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01032251001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.93.4e-22133234199
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   +
  GSVIVT01032251001 133 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVAKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDAVLFI--R 221
                        99*****************************9445444.38************************************************..5 PP

                        SSEE..EEEEE-S CS
                 B3  87 rsefelvvkvfrk 99 
                        +++++l+++++r+
  GSVIVT01032251001 222 DEKQQLLLGIRRA 234
                        688889****997 PP
2Auxin_resp1201.9e-39259342183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+++s+F+v+YnPras+seFv++++k+ ka + +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  GSVIVT01032251001 259 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAAYsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 342
                        79****************************99987769********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.67E-44121262IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-41126248IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-18132224No hitNo description
SMARTSM010194.6E-22133235IPR003340B3 DNA binding domain
PROSITE profilePS5086311.914133235IPR003340B3 DNA binding domain
PfamPF023622.5E-20133234IPR003340B3 DNA binding domain
PfamPF065078.4E-35259342IPR010525Auxin response factor
PfamPF023096.1E-79211007IPR033389AUX/IAA domain
PROSITE profilePS5174527.7399221006IPR000270PB1 domain
SuperFamilySSF542778.14E-79351000No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1035 aa     Download sequence    Send to blast
MKAPTNGAAA AATAAPNPCE GEKKSINPEL WQACAGPLVN LPPAGTLVVY FPQGHSEQVA  60
ASMKKDVDAQ IPNYPNLPSR LLCILHNVTL HADPETDEVY AQMTLQPVPA YDKESLLRSD  120
LALKTNKPQT DFFCKTLTAS DTSTHGGFSV PRRAAEKIFP PLDFSMQPPA QELVAKDLHD  180
NVWTFRHIYR GQPKRHLLTT GWSLFVSGKR LFAGDAVLFI RDEKQQLLLG IRRANRQPTN  240
LSSSVLSSDS MHIGILAAAA HAAANNSPFT VFYNPRASPS EFVIPLAKYY KAAYSNQISL  300
GMRFRMMFET EESGTRRYMG TITGISDLDP VRWKNSQWRN LQVGWDESTA GERRNRVSIW  360
EIEPVTAPFF ICPPPFFRSK RPRQPGMPDD ESSDLENLFK RTMPWLGDDI CMKDPQAVHG  420
LSLVQWMNMQ QNPPLGNSAQ PNYMHSLSGS LDQLTKLPAT LNPLGSVIQP QQQLNDIAQQ  480
PRQNLMNQTL PSSQVQAQLL QQPQALVQNH NILQQQPSPP DQANQQLQMS DNQIQLQLLQ  540
KLQQQQQSLL AQQSTMQQTA QLTQLQDPQR QLLDVSQNFS RSVASGQILE MPQATSTSLP  600
QSLVIPQQIT KSNSQTNVRF SHPPQQPKLQ QQQPGMLPEL PGHVVLPPMT ATNQLSTAGS  660
SLLTGAAGAG QSGITDDVPS CSTSPSTNNC PNVIQPILNG RAHRTTAMEE MAQSSATLLS  720
GSGLETISAN ANLVKDFQQK PDIKPSLNIS KSHNQGFFAP QTYVNVAAVQ TDYLDTSSSA  780
TSVCLSQNDH LQQNNNPLSF NQPSMMFRDT SQDREAQADP RNNVQFGTNI DSQLGIPMLP  840
DPILSKGMVG SGKEFSNNLS SGGLLANYEN PKDAQQDLSS SIVSQSFGVP DMAFNSIDSA  900
INDSSFLNRG PWAPAPQFQR MRTYTKVYKR GAVGRSIDIT RYSGYDELKQ DLARRFGIEG  960
QLEDRQRIGW KLVYVDHEND VLLVGDDPWE EFVNCVRCIK ILSPQEVQQM SLDGDIGNSV  1020
LQNQACSSSD GGNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1682236347388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.46200.0bud| flower| fruit| inflorescence| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4331210.0AM433121.2 Vitis vinifera contig VV78X239770.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010656700.10.0PREDICTED: auxin response factor 19
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLF6H9P60.0F6H9P6_VITVI; Auxin response factor
STRINGVIT_11s0065g00310.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP41931125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19