PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01032093001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 519aa    MW: 57006.2 Da    PI: 8.0348
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01032093001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.2e-08181201526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C++f++ G C++Gd C +aHg
  GSVIVT01032093001 181 PCPDFRK-GACRRGDLCEYAHG 201
                        8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.204.8E-117107IPR020683Ankyrin repeat-containing domain
CDDcd002044.27E-89108No hitNo description
SuperFamilySSF484032.49E-1010108IPR020683Ankyrin repeat-containing domain
SMARTSM0024814001040IPR002110Ankyrin repeat
PROSITE profilePS502979.83457108IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00395787IPR002110Ankyrin repeat
PfamPF136379.0E-558105No hitNo description
SMARTSM00248170092124IPR002110Ankyrin repeat
SMARTSM003561.2E-5176202IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.169181203IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-6181201IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4181203IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4209239IPR000571Zinc finger, CCCH-type
SMARTSM0035645211234IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MNHLTVETED SFSSLHELAA NNDVDGFKRS LERDASAINE VGLWYGRQKG SKQMVLKHRT  60
PMMVAATYGS VEVLKLILSR SDADVNISCG PDKSTALHCA ASGGSRNLRI SITKKKEYPI  120
DPSLPDIKNS IYATDEFRMF SFKVRPCSRA YSHDWTECPF VHPGENARRR DPRKFHYSCV  180
PCPDFRKGAC RRGDLCEYAH GVFECWLHPA QYRTRLCKDG TNCARRVCFF AHTSEELRPL  240
YLSTGSAVPS PRASGPANAM DMAAALSLLP GSPSSLGLSL MFLPLTFLEA TFSPPRTNAA  300
SLSRSARSKT LTPSNLEELF SAEISSSPRY SDSSAVFSPS HKSAILNQFQ QQQQSMLMSP  360
RSMEPISPMG PRLSAIAQRE KQHQQLRSLS SRDLGSNNPA SVVGSPVNSW SKWGSPTGKL  420
DWSVNGDEMG RLKRSSSFEL GNNGEEPDLS WVHSLVKESP PEMMKEKFAA PVSASASSGE  480
GLNSNSQIES NSNSQIDSVD HSVIGAWLEQ MQLDQLVV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.52600.0bud| flower| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4812930.0AM481293.2 Vitis vinifera contig VV78X066535.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267839.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotQ10EL11e-160C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A438J1L30.0A0A438J1L3_VITVI; Zinc finger CCCH domain-containing protein 30
TrEMBLF6HB600.0F6HB60_VITVI; Uncharacterized protein
STRINGVIT_13s0064g00920.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-98CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]