PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01031333001 | ||||||||
Common Name | LOC100254549, VIT_14s0060g00300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 237aa MW: 26716.7 Da PI: 10.0735 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.2 | 3.7e-17 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r+ tf kR++g++KK +ELS+LC+++++ i++s+ GSVIVT01031333001 11 ITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAILYSP 50 89************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.722 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.9E-24 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.13E-23 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 1.16E-24 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-18 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MTRKKVKLAY ITNDSARKAT FKKRKKGLMK KVSELSTLCG IDACAILYSP YDSQPEVWPS 60 PLGVQRVLAH FKKMPEMEQS KKMVNQESFL RQRIAKGNEQ LKKQRKDNRE KEITQVMYQS 120 LTGKGLQNLN IVDLNDLGWM IDQNLKDIHK RIESLNKEAQ SQAAAAAAAA AGQLIKTGGK 180 AQEEKPAFDS MDAIQRQQWF VDLVNPNEQM GFAGDDMMLP FGDNNHNALW PNGFFP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLAYITNDSARKATFKKRK |
2 | 21 | 25 | KKRKK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00553 | DAP | Transfer from AT5G48670 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM461949 | 0.0 | AM461949.2 Vitis vinifera contig VV78X127711.9, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002279507.1 | 1e-177 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 1e-69 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A438D0C0 | 1e-175 | A0A438D0C0_VITVI; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | D7UAA8 | 1e-175 | D7UAA8_VITVI; Uncharacterized protein | ||||
STRING | VIT_14s0060g00300.t01 | 1e-176 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 4e-70 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01031333001 |
Entrez Gene | 100254549 |
Publications ? help Back to Top | |||
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