PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01030735001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 264aa    MW: 28526.6 Da    PI: 6.1447
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01030735001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS180.51.2e-55972421156
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        lv++L++cA+av++++++la+al++++  la++++ +m+++a+yf+eALa+r++r        + p+++ e++ s+ l++   f+e++P+lk
  GSVIVT01030735001  97 LVHTLMACADAVQQDNMKLADALVKHIGLLAASQAGAMRKVATYFAEALARRIYR--------IYPQDSLESSYSDILQM--HFYEACPYLK 178
                        689****************************************************........44555554445555444..5********* PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgske 156
                        f+h+taNqaIlea++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpps+R+Tg+g+p++++++
  GSVIVT01030735001 179 FAHFTANQAILEAFAGANRVHVIDFGLKQGMQWPALMQALALRPGGPPSFRLTGIGPPQPDNTD 242
                        *********************************************************9988665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011291.6E-20159No hitNo description
PfamPF120414.4E-26153IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098534.82671263IPR005202Transcription factor GRAS
PfamPF035144.2E-5397242IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MVDVAQKLEQ LEMVMGNAQE DGISHLSSGT VHYNPSDLSG WVQSMLTELN PPSSAFASSS  60
QQTPIDDPLL APSDAIPGVA STRPVVVVDS QETGVRLVHT LMACADAVQQ DNMKLADALV  120
KHIGLLAASQ AGAMRKVATY FAEALARRIY RIYPQDSLES SYSDILQMHF YEACPYLKFA  180
HFTANQAILE AFAGANRVHV IDFGLKQGMQ WPALMQALAL RPGGPPSFRL TGIGPPQPDN  240
TDACIACWLD RGPSRRCCRL SKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-279223413165Protein SCARECROW
5b3h_D2e-279223413165Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.119320.0flower| fruit| inflorescence| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in both vegetative and reproductive tissues. {ECO:0000269|PubMed:15347801}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4703040.0AM470304.2 Vitis vinifera contig VV78X082660.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002266267.11e-142PREDICTED: DELLA protein GAI
SwissprotQ7Y1B61e-124GAI_SOLLC; DELLA protein GAI
TrEMBLF6HSI01e-142F6HSI0_VITVI; DELLA protein GAI2
STRINGVIT_14s0006g00640.t011e-142(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-109RGA-like 1
Publications ? help Back to Top
  1. Nir I, et al.
    The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure.
    Plant Cell, 2017. 29(12): p. 3186-3197
    [PMID:29150547]