PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01030333001 | ||||||||
Common Name | LOC104880030, VIT_08s0058g00110, VITISV_022410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | bHLH | ||||||||
Protein Properties | Length: 162aa MW: 18161.4 Da PI: 6.9558 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.4 | 8.2e-11 | 45 | 86 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r RR+ri ++f L++l+P +K++ +++Le+A++Y+k+L+ GSVIVT01030333001 45 ARERRHRISDRFKILQSLVPGG-----TKMDTVSMLEEAIHYVKYLK 86 699*****************87.....8*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.294 | 36 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.1E-13 | 41 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.6E-12 | 42 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-12 | 42 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.11E-14 | 42 | 89 | No hit | No description |
Pfam | PF00010 | 2.7E-8 | 45 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MDYPSSSNPS SSLSSSVANI GKDKKKGGKR SKGVKLSTDP QSVAARERRH RISDRFKILQ 60 SLVPGGTKMD TVSMLEEAIH YVKYLKTQIW LHQTMINFVD DDPSLLYQSD SLPSHQQEAF 120 YSPDETLAMM QPYITTTAPV RDSYCFQGEE TMFSDASVNY Y* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM464748 | 0.0 | AM464748.2 Vitis vinifera contig VV78X157215.7, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010653434.1 | 1e-118 | PREDICTED: transcription factor LAX PANICLE | ||||
TrEMBL | A0A438HHN3 | 1e-117 | A0A438HHN3_VITVI; Transcription factor bHLH140 | ||||
TrEMBL | A5BMK9 | 1e-117 | A5BMK9_VITVI; Uncharacterized protein | ||||
STRING | VIT_08s0058g00110.t01 | 1e-117 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8941 | 10 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01310.1 | 4e-32 | APRATAXIN-like |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01030333001 |
Entrez Gene | 104880030 |