PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G01310.1
Common NameAPTX, BHLH140, EN122, T10O8.20
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 912aa    MW: 101388 Da    PI: 8.3383
Description APRATAXIN-like
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G01310.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.62.3e-085292954
                 HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH  9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                  r RR+ri ++f  L++++P  a      K++ +++L +A+ Y+k L
  AT5G01310.1 52 ARDRRHRISDRFKILQSMVPGgA------KMDTVSMLDEAISYVKFL 92
                 699*****************966......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.1544392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1248103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.42E-104996No hitNo description
SMARTSM003533.2E-114998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-104996IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-65392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF525406.04E-14226370IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF136711.2E-12229337No hitNo description
Gene3DG3DSA:3.40.50.3005.8E-20229364IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.220.109.3E-4452492No hitNo description
SuperFamilySSF529491.37E-18506644No hitNo description
PROSITE profilePS5115412.793511690IPR002589Macro domain
SMARTSM005061.0E-4523658IPR002589Macro domain
Gene3DG3DSA:3.40.220.106.8E-16523642No hitNo description
PfamPF016611.4E-6546630IPR002589Macro domain
SuperFamilySSF541971.87E-41695876IPR011146HIT-like domain
PROSITE profilePS510849.263720829IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.101.1E-12722826IPR011146HIT-like domain
PfamPF119692.4E-26723833No hitNo description
PROSITE patternPS008920802820IPR019808Histidine triad, conserved site
PfamPF162782.0E-10838892IPR032566Aprataxin, C2HE/C2H2/C2HC zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006260Biological ProcessDNA replication
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006790Biological Processsulfur compound metabolic process
GO:0009150Biological Processpurine ribonucleotide metabolic process
GO:0090305Biological Processnucleic acid phosphodiester bond hydrolysis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
GO:0046983Molecular Functionprotein dimerization activity
GO:0047627Molecular Functionadenylylsulfatase activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0009005anatomyroot
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0025022anatomycollective leaf structure
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 912 aa     Download sequence    Send to blast
MDDFNLRSEN PNSSSTTSSS SSSFHRHKSE TGNTKRSRST STLSTDPQSV AARDRRHRIS  60
DRFKILQSMV PGGAKMDTVS MLDEAISYVK FLKAQIWYHQ NMLLFINDHE TTSSCTYSPG  120
AGEFGPKLFG YDDDYAPIMD TYSQGVPLTV ADSKYTPWFG SVDDEQEHVT YFKYRRATRH  180
ALRGHCNCII GETEEFADQR EKMEVQIEES GKNQTSPESI EADKAKQIVV LLIGPPGSGK  240
STFCDTAMRS SHRPWSRICQ DIVNNGKAGT KAQCLKMATD SLREGKSVFI DRCNLDREQR  300
SEFIKLGGPE FEVHAVVLEL PAQVCISRSV KRTGHEGNLQ GGRAAAVVNK MLQSKELPKV  360
NEGFSRIMFC YSDADVDNAV NMYNKLGPMD TLPSGCFGEK KLDTKSQPGI MKFFKKVSAL  420
PASSSNEATN TTRKADEMTA NVRVSPVKLG SADIVPTLAF PSISTADFQF DLEKASDIIV  480
EKAEEFLSKL GTARLVLVDL SRGSKILSLV KAKASQKNID SAKFFTFVGD ITKLRSEGGL  540
HCNVIANATN WRLKPGGGGV NAAIFKAAGP DLETATRVRA NTLLPGKAVV VPLPSTCPLH  600
NAEGITHVIH VLGPNMNPNR PDNLNNDYTK GCKTLREAYT SLFEGFLSVV QDQSKLPKRS  660
SQTAVSDSGE DIKEDSERNK KYKGSQDKAV TNNLESESLE DTRGSGKKMS KGWNTWALAL  720
HSIAMHPERH ENVVLEYLDN IVVINDQYPK ARKHVLVLAR QESLDGLEDV RKENLQLLQE  780
MHNVGLKWVD RFQNEDASLI FRLGYHSVPS MRQLHLHVIS QDFNSDSLKN KKHWNSFTTS  840
FFRDSVDVLE EVNSQGKANV ASEDLLKGEL RCNRCRSAHP NIPKLKSHVR SCHSQFPDHL  900
LQNNRLVARA ET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lw0_A3e-9345765137231Basic helix-loop-helix, putative, expressed
5lw0_B3e-9345765137231Basic helix-loop-helix, putative, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.546710.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184128370.0
Genevisible251111_at0.0
Expression AtlasAT5G01310-
AtGenExpressAT5G01310-
ATTED-IIAT5G01310-
Functional Description ? help Back to Top
Source Description
TAIREncodes a protein that has adenylylsulfate sulfohydrolase activity (E.C. 3.6.2.1) in vitro.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G01310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G01310
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1617460.0AL161746.2 Arabidopsis thaliana DNA chromosome 5, BAC clone T10O8 (ESSA project).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024011424.10.0LOW QUALITY PROTEIN: transcription factor bHLH140
SwissprotQ9M0410.0BH140_ARATH; Transcription factor bHLH140
TrEMBLD7M7380.0D7M738_ARALL; Basic helix-loop-helix family protein
STRINGAT5G01310.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM948599
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Petrucco S,Volpi G,Bolchi A,Rivetti C,Ottonello S
    A nick-sensing DNA 3'-repair enzyme from Arabidopsis.
    J. Biol. Chem., 2002. 277(26): p. 23675-83
    [PMID:11948185]
  3. Heim MA, et al.
    The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.
    Mol. Biol. Evol., 2003. 20(5): p. 735-47
    [PMID:12679534]
  4. Toledo-Ortiz G,Huq E,Quail PH
    The Arabidopsis basic/helix-loop-helix transcription factor family.
    Plant Cell, 2003. 15(8): p. 1749-70
    [PMID:12897250]
  5. Komatsu K, et al.
    LAX and SPA: major regulators of shoot branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2003. 100(20): p. 11765-70
    [PMID:13130077]
  6. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  7. Bailey PC, et al.
    Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana.
    Plant Cell, 2003. 15(11): p. 2497-502
    [PMID:14600211]
  8. Wagner R,Pfannschmidt T
    Eukaryotic transcription factors in plastids--Bioinformatic assessment and implications for the evolution of gene expression machineries in plants.
    Gene, 2006. 381: p. 62-70
    [PMID:16934950]
  9. Guranowski A, et al.
    Dual activity of certain HIT-proteins: A. thaliana Hint4 and C. elegans DcpS act on adenosine 5'-phosphosulfate as hydrolases (forming AMP) and as phosphorylases (forming ADP).
    FEBS Lett., 2010. 584(1): p. 93-8
    [PMID:19896942]
  10. Yang F,Wang Q,Schmitz G,M
    The bHLH protein ROX acts in concert with RAX1 and LAS to modulate axillary meristem formation in Arabidopsis.
    Plant J., 2012. 71(1): p. 61-70
    [PMID:22372440]
  11. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]