PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01030305001
Common NameVIT_08s0058g00310
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 443aa    MW: 50343.3 Da    PI: 4.2792
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01030305001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS95.11e-292544242185
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         +lL +  eav++++ el + +L  + e  +p g++++Rla+ + e ++++              +++   ++++ +aa+k+f++++P+ +f
  GSVIVT01030305001 254 LHLLKAYGEAVEENQRELSEVILRSICEKGNPLGETLERLAFNLFEDIERQDDY----------LKQE---SMQNFAAAFKAFYQIFPYGRF 332
                        58899999**********************************877665544332..........2333...488999*************** PP

               GRAS  94 shltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefn 179
                        +h++aN+aIlea+ g+ e+vHi+Dfd+++G+QWp++++a+ ++      +R+T ++  e++      + + eet++ L + A+++g+++  +
  GSVIVT01030305001 333 AHFAANSAILEAMPGDvETVHIVDFDMGEGVQWPPMIEAIGKQH---KAVRLTSIKWGEEDscsasAQWRFEETKRWLCNHARSMGLNLTVE 421
                        ****************9************************975...56******988877888888889******************9988 PP

               GRAS 180 vlvakr 185
                         +   +
  GSVIVT01030305001 422 EV---K 424
                        76...3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098521.58227442IPR005202Transcription factor GRAS
PfamPF035143.6E-27254424IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007520developmental stageroot development stage
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MVERGIKNKH PHLTSFQERK KAELGNLAGM EFCGKRVESD GWLHFFFVYY HLGVIFVATS  60
FHQFIYKHSY KTFSSKLQSS CPVNFIKKMN QPEKFQPSWP FYNILDSTLD QVELYGFDID  120
EDVCGYEFSS SITTTEDSSG IPSAPDFPTV ISSEFVGFPG CDEALQTSFL IGDLPLNMEE  180
FETILCGEIG DAYGWLDGSE ESFPSQQQST EGEDEWSPCP STKSSEALID TTSTQQSLTF  240
PAEGVEIDNQ QSILHLLKAY GEAVEENQRE LSEVILRSIC EKGNPLGETL ERLAFNLFED  300
IERQDDYLKQ ESMQNFAAAF KAFYQIFPYG RFAHFAANSA ILEAMPGDVE TVHIVDFDMG  360
EGVQWPPMIE AIGKQHKAVR LTSIKWGEED SCSASAQWRF EETKRWLCNH ARSMGLNLTV  420
EEVKIEDLFI WEKQEQPWNP FL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4795830.0AM479583.2 Vitis vinifera contig VV78X252597.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010653403.10.0PREDICTED: nodulation-signaling pathway 2 protein
TrEMBLD7SQU70.0D7SQU7_VITVI; Uncharacterized protein
STRINGVIT_08s0058g00310.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9520612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.11e-15GRAS family protein