PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01030079001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family FAR1
Protein Properties Length: 1356aa    MW: 154757 Da    PI: 7.835
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01030079001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1767.3e-2471162190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHel 89 
                        ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke      +w+v+++++ HnHel
  GSVIVT01030079001  71 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvdgVTQWYVSQFSNVHNHEL 161
                        69********************8888.******************************************998766789*************9 PP

               FAR1  90 a 90 
                         
  GSVIVT01030079001 162 L 162
                        6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-2171162IPR004330FAR1 DNA binding domain
PfamPF105512.7E-24294387IPR018289MULE transposase domain
PROSITE profilePS509669.545566601IPR007527Zinc finger, SWIM-type
PfamPF044343.6E-6573597IPR007527Zinc finger, SWIM-type
SMARTSM005750.0012576603IPR006564Zinc finger, PMZ-type
SuperFamilySSF517357.28E-588641053IPR016040NAD(P)-binding domain
Gene3DG3DSA:3.40.50.7201.0E-768661049IPR016040NAD(P)-binding domain
HamapMF_0096688.8918671349IPR001282Glucose-6-phosphate dehydrogenase
TIGRFAMsTIGR008713.8E-1738691348IPR001282Glucose-6-phosphate dehydrogenase
PfamPF004798.4E-578721050IPR022674Glucose-6-phosphate dehydrogenase, NAD-binding
PRINTSPR000791.6E-5310061019IPR001282Glucose-6-phosphate dehydrogenase
PRINTSPR000791.6E-5310301058IPR001282Glucose-6-phosphate dehydrogenase
PROSITE patternPS00069010401046IPR019796Glucose-6-phosphate dehydrogenase, active site
SuperFamilySSF553473.92E-10910401347No hitNo description
Gene3DG3DSA:3.30.360.101.9E-12510501347No hitNo description
PfamPF027813.8E-11010531347IPR022675Glucose-6-phosphate dehydrogenase, C-terminal
PRINTSPR000791.6E-5310821099IPR001282Glucose-6-phosphate dehydrogenase
PRINTSPR000791.6E-5311001116IPR001282Glucose-6-phosphate dehydrogenase
PRINTSPR000791.6E-5311871213IPR001282Glucose-6-phosphate dehydrogenase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006006Biological Processglucose metabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0004345Molecular Functionglucose-6-phosphate dehydrogenase activity
GO:0008270Molecular Functionzinc ion binding
GO:0050661Molecular FunctionNADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1356 aa     Download sequence    Send to blast
MAMKPSNNIW IRRQQCPCGD WKCYIKYEGD DQTSANSQLV KSETSSSSLA SEVVFTPYVG  60
QIFKSDDEAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH  120
PRDRKSVRCG CDAKLYLTKE IVDGVTQWYV SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD  180
QERILLLSKA GFPVNRIVRV LETEKGVQPG QLPFIEKDVR NFVRTCKKTV QENDALLTEK  240
RENDTLELLE TCKALSERDP DFVYDFTMDP NDKVENIAWS YGNSVHAYSV FGDVVAFDTT  300
YRSITYGLLL GVWFGIDNHG KAIFFGCVLL QDETSQSFAW ALQTFVRFMR GRRPQTILTD  360
IDSGLRDAIT SELPNTKHVI CLWHILSKLS SWFSLPLGPQ YMDFKSQFDI LCRLESIEDF  420
EHQWHHLVAQ FGLVSDKHIG LLFSYRASWP FSCIRGYFLA RMMTSEYSKS LDMFFKRILS  480
AQTCLQAFFE QVGVAASWAN QTRENMQYMH IKTCMPIEEH AQSILTPYAF NVLQHEIVLS  540
MQYATREMAN GSYLVRHYKT VDGGCLVIWM PEEEQIHCSC KEFEHSGLLC RHSLRLLVVK  600
NYFQLPDKYF PLRWRKESSL ITMDDHNTQS NSDECSQAFH SLAATLLTES LVSKERFNYV  660
HKELTGLLDH VRNMPVVDEV SLNMAPNNNI TSCCASNLIP SLIFFMKSSH FLFNSSALSN  720
PVSSSSSSSS SLITRNQFSW PICLSSSSST STSTSSSVIT MVLFCKIQPN CMATRINPCS  780
SSSFKHDVHI PTRRITIASS RTYRTSKWVS QISSGIHAKR HLELKSSNGY PLNAVPLQDG  840
NPLTEDHIAP QLKERPFISG SESPESTLSI TVVGASGDLA KKKIFPALFA LFYEDWLPEN  900
FAVFGYARTK MTDEELRDMI SKTLTCRIDK SANCGDKMDQ FLKRCFYHSG QYSSEEHFAE  960
LDKKLKEKEG GKLPNRLFYL SIPPNIFVDV VRCASLRASS ASGWTRVIVE KPFGRDSQSS  1020
GELTRSLKKY LNEDQIFRID HYLGKELVEN LSVLRFSNLV FEPLWSRNYI RNVQLIFSED  1080
FGTEGRGGYF DNYGIIRDIM QNHLLQILAL FAMETPVSLD AEDIRNEKVK VLRSMRPLQL  1140
EDVIVGQYKG HSKGGQSYPA YTDDPTVPKG SITPTFAAAA LFINNARWDG VPFLMKAGKA  1200
LHTRRAEIRV QFRHVPGNLY KRNFGTDLDK ATNELVLRVQ PDEAIYLKIN NKVPGLGMKL  1260
DRSDLNLLYR ARYPRGIPDA YERLLLDAIE GERRLFIRSD ELDAAWALFT PLLKESEEKK  1320
IIPELYPYGS RGPVGAHYLA AKHNVRWGDL SGEEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1qki_A1e-14684313426497GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE
1qki_B1e-14684313426497GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE
1qki_C1e-14684313426497GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE
1qki_D1e-14684313426497GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE
1qki_E1e-14684313426497GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE
1qki_F1e-14684313426497GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE
1qki_G1e-14684313426497GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE
1qki_H1e-14684313426497GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4702210.0AM470221.2 Vitis vinifera contig VV78X195282.2, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010657467.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_010657468.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_010657469.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_019078798.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_019078799.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_019078800.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLF6HHP50.0F6HHP5_VITVI; Uncharacterized protein
STRINGVIT_12s0057g00960.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]