PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01029177001
Common NameVIT_11s0052g01160
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ARR-B
Protein Properties Length: 217aa    MW: 24742.3 Da    PI: 4.8828
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01029177001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like23.71e-07187207121
            G2-like   1 kprlrWtpeLHerFveaveqL 21 
                        k+rl+Wt+eLH +F++a++qL
  GSVIVT01029177001 187 KQRLNWTSELHIKFLNAIHQL 207
                        79******************9 PP
2Response_reg81.72.4e-27211281108
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl vdD+ + +++l ++le+ +y +v++++++ eale+l+e++  +D++++D++mp+mdG++llk i  e  ++p+i+ + +++ +++l+ +
  GSVIVT01029177001  21 VLAVDDNIVCLKILVTLLEQCRY-KVTATTKACEALEMLRENRenFDIVITDVKMPDMDGFTLLKIIGLEM-DIPVIMTSVNDDRSTVLKGI 110
                        799********************.***************998889**********************6644.8******************* PP

                        HTTESEEEESS--HHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelv 108
                        + Ga+d+l Kp+   e+ 
  GSVIVT01029177001 111 RHGARDYLLKPVRVLEIK 128
                        ***********9877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521726.12E-3417137IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.4E-3918157No hitNo description
SMARTSM004481.8E-2819131IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.52920135IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.6E-2321129IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.42E-2522134No hitNo description
Gene3DG3DSA:1.10.10.602.2E-6185211IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005622Cellular Componentintracellular
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009029anatomystamen
PO:0007016developmental stagewhole plant flowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MSDDYETPSP DGTQFPDGLR VLAVDDNIVC LKILVTLLEQ CRYKVTATTK ACEALEMLRE  60
NRENFDIVIT DVKMPDMDGF TLLKIIGLEM DIPVIMTSVN DDRSTVLKGI RHGARDYLLK  120
PVRVLEIKNI WQHVVRKNLF DSGKPGVKEE KAMEMEKSKE KGGGEEEEEE EDHPKEHSFE  180
DGSVRKKQRL NWTSELHIKF LNAIHQLETA DSRCLI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4600590.0AM460059.2 Vitis vinifera contig VV78X220569.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010656915.21e-152PREDICTED: two-component response regulator ORR22-like
SwissprotB8AEH12e-60ORR23_ORYSI; Two-component response regulator ORR23
SwissprotQ6K8X63e-60ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLD7SQ851e-158D7SQ85_VITVI; Uncharacterized protein
STRINGVIT_11s0052g01160.t011e-159(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.11e-57response regulator 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]