PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01028716001 | ||||||||
Common Name | LOC100233044, TRY, VIT_16s0050g02530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB_related | ||||||||
Protein Properties | Length: 89aa MW: 10671.2 Da PI: 9.9559 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.4 | 6.8e-08 | 30 | 69 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++++E++l+++ ++ G + W++Ia +++ gR ++++ +w GSVIVT01028716001 30 MSEQEEDLIYRMYRLVGDR-WDLIAGRIP-GRKPEEIERFWI 69 79***************99.*********.*********995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 3.4E-6 | 26 | 74 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.70E-5 | 29 | 68 | No hit | No description |
Pfam | PF00249 | 2.4E-7 | 30 | 69 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.017 | 31 | 68 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-9 | 31 | 69 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.18E-7 | 31 | 70 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MDRRRRKLPK IAAPSQSEEV SSIEWEFINM SEQEEDLIYR MYRLVGDRWD LIAGRIPGRK 60 PEEIERFWIM RNRQGYAERG KEASQKKQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1 | 7 | DRRRRKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.9731 | 1e-150 | fruit| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Ubiquitous in young leaves. Later, restricted to the leaf base in the trichome initiation zone. In mature leaves, confined to trichome cells. {ECO:0000269|PubMed:12356720}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, siliques and inflorescences. {ECO:0000269|PubMed:12356720}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Involved in epidermal cell fate specification. Negative regulator of trichome development, including endoreplication, by lateral inhibition involving intercellular interactions. Promotes the formation of hair developing cells (trichoblasts) in H position in root epidermis, probably by inhibiting non-hair cell (atrichoblasts) formation. {ECO:0000269|PubMed:10368181, ECO:0000269|PubMed:12356720}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negative autoregulation. Repressed by CPC. {ECO:0000269|PubMed:12356720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU181427 | 1e-147 | EU181427.1 Vitis vinifera Myb-related TRIPTYCHON-like protein (TRY) mRNA, complete cds. | |||
GenBank | FQ385522 | 1e-147 | FQ385522.1 Vitis vinifera clone SS0AEB31YP12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002268795.1 | 2e-57 | PREDICTED: transcription factor TRY | ||||
Swissprot | Q8GV05 | 2e-38 | TRY_ARATH; Transcription factor TRY | ||||
TrEMBL | A8VPW6 | 4e-56 | A8VPW6_VITVI; Myb-related TRIPTYCHON-like protein | ||||
STRING | VIT_16s0050g02530.t01 | 7e-57 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP4207 | 8 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53200.1 | 7e-41 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01028716001 |
Entrez Gene | 100233044 |