PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01027620001
Common NameLOC100248994, VIT_15s0048g00840
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family LBD
Protein Properties Length: 195aa    MW: 21043 Da    PI: 6.9917
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01027620001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.84.3e-39111111100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        +C aCk+lrrkC+k+Cv+apyf ++q +++fa+vhk+FGasn +kll+ +p ++r da+ +l+yeA ar+rdPvyG+v+++++lqqq+++l+
  GSVIVT01027620001  11 PCGACKFLRRKCVKGCVFAPYFDSDQgTAHFAAVHKVFGASNASKLLTGIPAHKRLDAVVTLCYEALARLRDPVYGCVAHVFTLQQQVMNLQ 102
                        7***********************9989**************************************************************** PP

             DUF260  92 aelallkee 100
                        aela ++++
  GSVIVT01027620001 103 AELAFIQAR 111
                        ***998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.67810112IPR004883Lateral organ boundaries, LOB
PfamPF031954.1E-3811109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MTGSKGDGGG PCGACKFLRR KCVKGCVFAP YFDSDQGTAH FAAVHKVFGA SNASKLLTGI  60
PAHKRLDAVV TLCYEALARL RDPVYGCVAH VFTLQQQVMN LQAELAFIQA RLSTLQRIPS  120
LAPPPLLPES APQPNLQSDF FNVPLQSHEA SMEAADFCNN SMDRELEDGD LQTLAQEFVS  180
RFLPGVKVRD SSSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-3781058104LOB family transfactor Ramosa2.1
5ly0_B9e-3781058104LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4632581e-163AM463258.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X156046.15, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002273687.21e-143PREDICTED: LOB domain-containing protein 19
SwissprotO813222e-70LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A438DZS41e-141A0A438DZS4_VITVI; LOB domain-containing protein 31
TrEMBLD7U7T11e-141D7U7T1_VITVI; Uncharacterized protein
STRINGVIT_15s0048g00840.t011e-142(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.11e-69LOB domain-containing protein 31