PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01027182001 | ||||||||
Common Name | mybPA1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 28600.1 Da PI: 8.3349 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.7 | 1.8e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed ll ++++ +G g+W++ +++ g+ R++k+c++rw +yl GSVIVT01027182001 14 RGSWTAREDTLLTKYIQAHGEGHWRSLPKKAGLLRCGKSCRLRWMNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.8 | 4.5e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l GSVIVT01027182001 67 RGNITPDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112 7999******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.588 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.61E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.12E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.3 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-27 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.07E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MGRAPCCSKV GLHRGSWTAR EDTLLTKYIQ AHGEGHWRSL PKKAGLLRCG KSCRLRWMNY 60 LRPDIKRGNI TPDEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKKLRSSK 120 RVKISKDEEN SNHKVHLPKP VRVTSLISMS RNNSFESNTV SGGSGSSSGG NGESLPWPSF 180 RDIRDDKVIG VDGVDFFIGD DQGQDLVASS DPESQSHMPP TDNSLDKLYE EYLQLLERED 240 TQVQLDSFAE SLLI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 122 | KKLRSSKRVK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.5761 | 0.0 | bud| fruit| inflorescence| leaf |
Function -- GeneRIF ? help Back to Top | ||||||
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ395145 | 0.0 | FQ395145.1 Vitis vinifera clone SS0AFA17YI13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001268160.1 | 1e-172 | MYBPA1 protein | ||||
TrEMBL | A4F4L3 | 1e-170 | A4F4L3_VITVI; MYBPA1 protein | ||||
STRING | VIT_15s0046g00170.t01 | 1e-169 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 5e-65 | myb domain protein 111 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01027182001 |
Entrez Gene | 100232899 |
Publications ? help Back to Top | |||
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