PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01027082001
Common NameLOC100251778, VIT_15s0046g01030
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 332aa    MW: 37624.8 Da    PI: 7.4995
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01027082001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.48.7e-12194219126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        y   +C+++ +tG+C +Gd CkF+H+
  GSVIVT01027082001 194 YQPDICKDYKETGYCGFGDACKFMHD 219
                        67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.02E-9192224IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577193221IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-7193220IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9194219IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-11194224IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.8E-13259320IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578506.8E-13270313No hitNo description
PfamPF139206.9E-9270311No hitNo description
SMARTSM001842.4E-4271308IPR001841Zinc finger, RING-type
CDDcd001623.35E-8271312No hitNo description
PROSITE profilePS5008910.512271309IPR001841Zinc finger, RING-type
PROSITE patternPS005180286295IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034247Biological ProcesssnoRNA splicing
GO:0045292Biological ProcessmRNA cis splicing, via spliceosome
GO:0005684Cellular ComponentU2-type spliceosomal complex
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MADSGEIQPT EPVDTGEKQQ SEPVCNFFRK PTKNKNIRKR THDEDENEDS KTGTSVLHQQ  60
KKPPKPDNKL YFSTGSSRKS TMDEPNKESE PIFQFESSKE IQVQHDSRAT ATLETETDFS  120
RDARAIRERV LKQSQDALKG KNKSDEKLYK GIHGYTDYKA GFRREQTVAS EKAGGAHGPL  180
RASAHIRASA RFDYQPDICK DYKETGYCGF GDACKFMHDR GDYKSGWQME KEWEEAEKAR  240
KRNLAMGGDD ADEGGGGQSD EDDDDALPFA CFICRQPFVD PVVTKCKHFF CEHCALRHHS  300
KNKKCFVCNQ PTLGMFNTAH EIRKKMAAER K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M2e-64106330113321RING finger protein 113A
5z58_M2e-64106330113321RING finger protein 113A
6ff4_t2e-64106330113321RING finger protein 113A
6ff7_t2e-64106330113321RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3828140.0FQ382814.1 Vitis vinifera clone SS0ABG42YK19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277034.20.0PREDICTED: zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-168C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLD7UCN80.0D7UCN8_VITVI; Uncharacterized protein
STRINGVIT_15s0046g01030.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP58961720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-157C3H family protein