PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01026574001
Common NameVIT_04s0044g00620
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 400aa    MW: 45423.9 Da    PI: 4.6922
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01026574001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS96.54e-301182452132
               GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                         +lLl+ Aeav++++  la++++ +l++l     +g + ++Rla +ft++L  r  +  +e      p +++ +++ ++++a+++++e+sP+
  GSVIVT01026574001 118 ADLLLAGAEAVEAQNWPLASSIILKLNDLllHQAKGdNQFNRLALFFTQGLYYRSIS-APE-----MPLQKPVSRQPNTMSAFQMLQELSPY 203
                        679*************************98855555489*************99988.222.....333333445678899*********** PP

               GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaL 132
                        +kf+h+taNqaIlea+eg ++vH+iDfdi++G+Q +++++++
  GSVIVT01026574001 204 VKFAHFTANQAILEAAEGGQEVHVIDFDIMEGIQSLSFIKTF 245
                        *************************************99875 PP
2GRAS77.22.9e-24243392225373
               GRAS 225 devLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhet 311
                        +++L  v +lsPk+vv+ve++    ++  + sF+e f+eal++y+a+ dsl ++++       + +E+e+l+++i n + +   e    +++
  GSVIVT01026574001 243 KTFLGGVSKLSPKIVVLVEEDlfnfCKIPTMSFVEFFCEALHHYAAFSDSLMSSFSGIYkVGLRLIEEEFLRNRIWNSLRQFPCE----KKE 330
                        689******************99888999**********************6666554426778899999*********999999....555 PP

               GRAS 312 lekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                        ++ W++ + +   Fkp+pls+ +++qak l+  ++++ y v++e+  l l+Wk+rpL+++S W
  GSVIVT01026574001 331 KSLWEDGFASlKRFKPIPLSSCNVAQAKFLVGLFSGE-YWVKHENCRLALCWKSRPLTTASIW 392
                        778*****98568**********************77.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.7291399IPR005202Transcription factor GRAS
PfamPF035141.4E-27118245IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MAYEQIPYPL EPSYNEKPLD CSLETVFSFQ TEDPICPKTI QDGIFHDQDM ERLFQVEDGL  60
LDFNSIHGDH IMGLERAEET KMGYDASQEA PEQVDFLADE SSHLNGIQEE LMEDCGLADL  120
LLAGAEAVEA QNWPLASSII LKLNDLLLHQ AKGDNQFNRL ALFFTQGLYY RSISAPEMPL  180
QKPVSRQPNT MSAFQMLQEL SPYVKFAHFT ANQAILEAAE GGQEVHVIDF DIMEGIQSLS  240
FIKTFLGGVS KLSPKIVVLV EEDLFNFCKI PTMSFVEFFC EALHHYAAFS DSLMSSFSGI  300
YKVGLRLIEE EFLRNRIWNS LRQFPCEKKE KSLWEDGFAS LKRFKPIPLS SCNVAQAKFL  360
VGLFSGEYWV KHENCRLALC WKSRPLTTAS IWIHAHFKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1212523727142Protein SCARECROW
5b3h_A1e-1212523726141Protein SCARECROW
5b3h_D1e-1212523726141Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4605360.0AM460536.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X247367.48, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276350.11e-170PREDICTED: nodulation-signaling pathway 2 protein
TrEMBLD7U4190.0D7U419_VITVI; Uncharacterized protein
STRINGVIT_04s0044g00620.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8945915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-15GRAS family protein