PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01026319001
Common Name04A18_70
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family G2-like
Protein Properties Length: 428aa    MW: 47196.2 Da    PI: 7.0615
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01026319001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94.1e-32242295255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  GSVIVT01026319001 242 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 295
                        9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.51E-15239295IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-28240295IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-23242295IPR006447Myb domain, plants
PfamPF002497.7E-7243294IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009887Biological Processorgan morphogenesis
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010158Biological Processabaxial cell fate specification
GO:0010229Biological Processinflorescence development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MPLEGVFIEP SSNPVPDLSL HISPPNNTSS PTSICNISSN EGGSNTNLLG QCQALKSDSN  60
TSVRSNLQAY TELSLAHAAN VMDEDGRCSR NFTVGADQEQ LHNPYHQNRH HHLSHHPNNN  120
LNHINHGVSL LDVSDVLRPI KGIPVYHNRS FPFLPLDHSR EKDSRMNLYQ LSYPSWSSSL  180
APSSSSAAAR LNGLSSDAFK SHQLHHHHVP SHHGVGPSEA SHGMMRSRFI PKLPTKRSMR  240
APRMRWTSTL HARFVHAVEL LGGHERATPK SVLELMDVKD LTLAHVKSHL QMYRTVKTTD  300
KPAASSGQSD GSGEEDISPM GNASDCGLCR FTDQRGASEG SLQQEIDYPS TNLWSNSSSR  360
EAWLQQNSSE MDGLKTASFP SQQRSGHQIE ECNSTLLKDY LGPNLDCKNP SLEFTLGRPD  420
WHGKEHD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-16243297458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-16243297458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-16243297357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-16243297357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-16243297357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-16243297357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-16243297458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-16243297458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-16243297458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-16243297458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-16243297458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-16243297458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.252660.0bud| flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4252880.0AM425288.2 Vitis vinifera contig VV78X200574.4, whole genome shotgun sequence.
GenBankCU9141480.0CU914148.1 Vitis vinifera cv. Cabernet-Sauvignon sequence from clone VVCS1H004A18 in linkage group 4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010648942.10.0PREDICTED: transcription repressor KAN1 isoform X2
TrEMBLC5DB440.0C5DB44_VITVI; KANADI like transcription factor
STRINGVIT_04s0043g00340.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5701580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.14e-74G2-like family protein