PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01026145001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | TCP | ||||||||
Protein Properties | Length: 289aa MW: 30556.5 Da PI: 10.7992 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 120.3 | 2.3e-37 | 101 | 177 | 2 | 74 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....e 74 a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ + GSVIVT01026145001 101 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSsvsvS 177 789*************************************************************9999977733332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.6E-32 | 107 | 179 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.892 | 107 | 161 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042752 | Biological Process | regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MKRVRSAALL YKLSLSTIFI AHSLSKHLVT ATPAHTRSQT TNKTKTPNTG QRKRTSWWKK 60 KFFFEGISKH MSTSDGAANG VTNGAIVDSQ RQQQPGNGAL AVKKPPAKDR HSKVDGRGRR 120 IRMPIICAAR VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSSVSVSPDA 180 VVAAAAAAAA AAGGFWAPTI SGRFMQQPMG EASAARVGNY LPIAQGHLNL LASLSGAPAS 240 SGRRDDDPPT EGDDSKEGGL EVVNDFEGGF LGFHSLGFVV GNEAFWGF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.3609 | 0.0 | bud| fruit| inflorescence| leaf| root |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00499 | DAP | Transfer from AT5G08330 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM461266 | 0.0 | AM461266.1 Vitis vinifera contig VV78X201682.8, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002268058.1 | 4e-94 | PREDICTED: transcription factor TCP7 | ||||
TrEMBL | F6HIN5 | 8e-93 | F6HIN5_VITVI; Uncharacterized protein | ||||
STRING | VIT_10s0042g00170.t01 | 1e-93 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8514 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08330.1 | 1e-36 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01026145001 |