PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01025867001
Common NameLOC100256914, VIT_08s0040g00100
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family G2-like
Protein Properties Length: 303aa    MW: 33011.2 Da    PI: 8.1059
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01025867001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.53e-334599155
            G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  GSVIVT01025867001 45 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 99
                       79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.88442102IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-3243100IPR009057Homeodomain-like
SuperFamilySSF466893.94E-174499IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-2645100IPR006447Myb domain, plants
PfamPF002491.6E-74798IPR001005SANT/Myb domain
PfamPF143793.0E-24131177IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MYHPKKFSTA SLVPHKAQGS EPLATVGALG GSSVKNSNPT GGSGKQRLRW TSDLHDRFVD  60
AITQLGGPDR ATPKGVLRVM GVPGLTIYHV KSHLQKYRLA KYLPESPADG SKDEKKGSGD  120
SGSSMDSAPG VQINEALRLQ MEVQKRLHEQ LEVQRQLQMR IEAQGKYLQK IIEEQQKLGG  180
ALKASEAVPL VDDKQNPSQS KPLPDASIGS SSPRKKQKVD DGMTHDCNPP LDPPKPDHGC  240
NPPLNPPKPD PKHGFIDRWD RDMYGNDGVF GFNLEIEFKE QEDGGSEQRA APLELEPMCG  300
SK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-2344102159Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-2344102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-2344102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-2344102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-2344102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-2344102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-2344102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-2344102159Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.127400.0fruit| inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4484440.0AM448444.2 Vitis vinifera contig VV78X086679.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010653694.10.0PREDICTED: myb family transcription factor PHL7 isoform X1
SwissprotQ9SJW03e-77PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLD7TQ770.0D7TQ77_VITVI; Uncharacterized protein
STRINGVIT_08s0040g00100.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.15e-70G2-like family protein