PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01025562001
Common NameLOC100256868, VIT_08s0040g03070
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 439aa    MW: 47992.2 Da    PI: 9.2194
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01025562001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.31.3e-32196252360
                        -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  GSVIVT01025562001 196 DGYNWRKYGQKQVKGSEYPRSYYKCTYPSCPVKKKVERSL-DGQIAEIVYKGEHNHSK 252
                        9***************************************.***************85 PP
2WRKY1031.7e-32357414259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         Dg++WrKYGqK+vkg+ +prsYYrCts +C+v+k+ver++edp  +++tYeg+Hnh+
  GSVIVT01025562001 357 GDGFRWRKYGQKVVKGNSYPRSYYRCTSLKCNVRKHVERASEDPGSFITTYEGKHNHD 414
                        5********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-29190253IPR003657WRKY domain
SuperFamilySSF1182901.57E-25193253IPR003657WRKY domain
SMARTSM007743.3E-36194252IPR003657WRKY domain
PfamPF031063.8E-25196250IPR003657WRKY domain
PROSITE profilePS5081123.571196253IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.7E-34341416IPR003657WRKY domain
PROSITE profilePS5081133.648351416IPR003657WRKY domain
SuperFamilySSF1182903.66E-28351416IPR003657WRKY domain
SMARTSM007746.7E-38356415IPR003657WRKY domain
PfamPF031062.8E-25358414IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MEIKESERIV VAKPVASRPT CSSFRSFSEL LAGAINASPP TPCPETSFAA IRPKTVRFKP  60
VANRAPIGVV SSQAQVSGTE VCNSSDKVLK SDSKPTVVYK PLAKLVSKTT VSLLANLGSS  120
NMSHQQTLAQ VEARVQPPNQ DRQHSRPHLS SNLHQTFPSQ EETDRTSEPS KTASQNLEED  180
QKPLLPSSNG DRPSYDGYNW RKYGQKQVKG SEYPRSYYKC TYPSCPVKKK VERSLDGQIA  240
EIVYKGEHNH SKPQPPKRNS SGTLGQGFVS DGTGKAPLNY DSGTTGALKA GGGTPDNSCG  300
LSGDCEEGSK GLEPEEDEPR SKRRKSENQS SETVIVGEGA QEPRIVVQNS TDSEILGDGF  360
RWRKYGQKVV KGNSYPRSYY RCTSLKCNVR KHVERASEDP GSFITTYEGK HNHDMPTRNT  420
NAATSEPDMQ AHTNKEKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-30196416877Probable WRKY transcription factor 4
2lex_A1e-30196416877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.139800.0bud| fruit| inflorescence| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Leaf promordia, trichomes, atrichoblasts, fertilized eggs, seed coat.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4483290.0AM448329.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X192910.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275978.10.0PREDICTED: WRKY transcription factor 44
RefseqXP_010653470.10.0PREDICTED: WRKY transcription factor 44
RefseqXP_010653471.10.0PREDICTED: WRKY transcription factor 44
RefseqXP_010653472.10.0PREDICTED: WRKY transcription factor 44
RefseqXP_019077272.10.0PREDICTED: WRKY transcription factor 44
SwissprotQ9ZUU01e-110WRK44_ARATH; WRKY transcription factor 44
TrEMBLF6HQV70.0F6HQV7_VITVI; Uncharacterized protein
STRINGVIT_08s0040g03070.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10259810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-111WRKY family protein
Publications ? help Back to Top
  1. Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
    Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
    Bioinformatics, 2012. 28(6): p. 815-22
    [PMID:22271267]
  2. Simon M, et al.
    Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes.
    Plant Cell, 2013. 25(9): p. 3175-85
    [PMID:24014549]
  3. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]
  4. Verweij W, et al.
    Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis.
    Plant Cell, 2016. 28(3): p. 786-803
    [PMID:26977085]
  5. Gonzalez A, et al.
    TTG2 controls the developmental regulation of seed coat tannins in Arabidopsis by regulating vacuolar transport steps in the proanthocyanidin pathway.
    Dev. Biol., 2016. 419(1): p. 54-63
    [PMID:27046632]
  6. Hassani-Pak K, et al.
    Developing integrated crop knowledge networks to advance candidate gene discovery.
    Appl Transl Genom, 2016. 11: p. 18-26
    [PMID:28018846]