PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01025263001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 549aa    MW: 60573.5 Da    PI: 7.5279
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01025263001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.25.8e-08267287526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C+ f++ G C++Gd C +aHg
  GSVIVT01025263001 267 PCPEFRK-GACRRGDLCEYAHG 287
                        8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.82E-1645164IPR020683Ankyrin repeat-containing domain
PfamPF127967.8E-1181155IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.4E-1786165IPR020683Ankyrin repeat-containing domain
SMARTSM002488.7E-486116IPR002110Ankyrin repeat
PROSITE profilePS5029716.28286162IPR020683Ankyrin repeat-containing domain
CDDcd002049.08E-1586164No hitNo description
PROSITE profilePS5008811.274121156IPR002110Ankyrin repeat
SMARTSM002480.0014121153IPR002110Ankyrin repeat
SMARTSM003562.9E-5262288IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5267287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.568267289IPR000571Zinc finger, CCCH-type
SMARTSM0035665297320IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MCSGPKKMDP KTPAPSSTPE TNTSTKDMNK PTGEVESENS FSSLLEFAAN NDVEGFQKSI  60
ALNGSAIDKV GLWYVHRKVS KQMVLEHRTP LMVAAMYGSV DIVKLILSLS EADVNRSCGP  120
DKSTALHCAV SGGTVNAVDV AKLLLLAGAD PNSTDAQGHR PFDVIDVSPK LPDLKATLEE  180
LLKNDDFVYQ QDFQISTVSL KSKYPVDPSL PDIKNSIYAT DEFRMYSFKI RPCSRAYSHD  240
WTECPFVHPG ENARRRDPRK FHYSCVPCPE FRKGACRRGD LCEYAHGVFE CWLHPAQYRT  300
RLCKDGTSCM RRVCFFAHTS KELRPLYMST GSGVASPRSA ANAMDMASAL SLFPGSPSAT  360
CWLRSSISAS GNLSVRSKAL TPSNLDELFS AEMSSPRYAD HVAASTMFSP SHKSVVLNQF  420
QHQQGMLMSP RGIEPLSPLS SRFSSLAHRE KQQQHLRSLS SRDLGSNGAG IVNSPANSWS  480
KWESPNGKID WSVQGEELAW HRKTFSIEQN REGPDLSWVQ SLVKEIDSID HAVLGAWLEQ  540
MQLDQIVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.108870.0cell culture| flower| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4542840.0AM454284.1 Vitis vinifera contig VV78X257465.39, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003632114.10.0PREDICTED: zinc finger CCCH domain-containing protein 30
RefseqXP_010651227.10.0PREDICTED: zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A438HLW70.0A0A438HLW7_VITVI; Zinc finger CCCH domain-containing protein 30
STRINGVIT_06s0004g02160.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]