PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01025252001
Common NameVIT_06s0004g02270
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NF-YA
Protein Properties Length: 307aa    MW: 33490.3 Da    PI: 6.9992
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01025252001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.34.1e-31135191158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        ++p+YVN+KQy++Il+RRq+Rak+e ekkl +k rkpylheSRh+hAlrR+R+sgGrF
  GSVIVT01025252001 135 QDPVYVNPKQYHGILRRRQSRAKAELEKKL-IKVRKPYLHESRHQHALRRARSSGGRF 191
                        68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.4E-35133194IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.25134194IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.2E-26137191IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.5E-23137159IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.5E-23168191IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MTGGNTNNSP SSECPNGGSE SNDGQSHSNG GLNEEDDDSI KESQATASSQ SNGNYGQEHQ  60
NLQHIAPNIQ IGSSECLTQP PQLELVGHSI ACASNPYQDP YYGGMMTAYG PQPLVHPHLL  120
GMHEARMPLP LEMTQDPVYV NPKQYHGILR RRQSRAKAEL EKKLIKVRKP YLHESRHQHA  180
LRRARSSGGR FAKKSAAEAS KHASEEKVTA LGSAPSPQSV SSSGSERLPS DSTETWNSSS  240
RQQEARGPQA HDTHEPPKYK NGSGYYQSPG DSQTTNHSHT SERGEEDQQW KSFSADQGSQ  300
RPHAFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-17134191158NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.45990.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4713760.0AM471376.2 Vitis vinifera contig VV78X021640.12, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282778.20.0PREDICTED: nuclear transcription factor Y subunit A-1
SwissprotQ9LXV56e-72NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLD7SL360.0D7SL36_VITVI; Uncharacterized protein
STRINGVIT_06s0004g02270.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9696612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.33e-65nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]