PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01024935001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 990aa    MW: 111271 Da    PI: 5.2452
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01024935001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS56.65.4e-1830738833117
               GRAS  33 pdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDf 117
                         ++++ +Rla++f+e+L+arla++++e+y  l++++ s    +  l+a++lf  ++P+  +s + aN++Il+ +e+++ +HiiDf
  GSVIVT01024935001 307 TKKSSKERLAHFFAEGLEARLAGTGTEIYTVLASKKVS---AAAMLKAYELFLAACPYKMISIFFANHMILRLAEKAKVLHIIDF 388
                        345799***********************999999998...999****************************************9 PP
2GRAS437.2e-14390447156214
               GRAS 156 eeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll 214
                        e++eetg+rLa+++e+++vpfe+n+ +ak++e++++e+L+v+++E++aVn++++  +ll
  GSVIVT01024935001 390 ERVEETGRRLARYCERFNVPFEYNA-IAKKWETIQIEDLKVDSNEVIAVNSMFRTVSLL 447
                        689**********************.7**************************987765 PP
3GRAS65.41.1e-20449529293373
               GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                        +++nv+aceg+er+er et+++W+ r  +aGF+++pl+++ +k+ k+ ++  + + + v+e+ ++l++gWk+r L++ S+W
  GSVIVT01024935001 449 SVMNVIACEGSERVERPETYRQWQVRTLNAGFRQLPLNQELTKKLKTKVKLGHHKDFLVDEDGNWLLQGWKGRVLFASSCW 529
                        689*************************************************9888************************* PP
4GRAS81.51.5e-258429453109
               GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        +lL++cA+avs++d++ a++lL+++++++sp gd  qRla++f+ +L+arla++++e+y  l++++ s    +  l+a++lf  ++P+ k+s
  GSVIVT01024935001 842 TLLIQCAQAVSADDHRTANELLKQIRQHSSPFGDGYQRLAHCFADGLEARLAGTGTEIYTVLASKKVS---AAAMLKAYELFLAACPFKKIS 930
                        58*********************************************************999999998...999****************** PP

               GRAS  95 hltaNqaIleavege 109
                         + aN++Il+ +e++
  GSVIVT01024935001 931 AFFANHMILRLAEKA 945
                        *********999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.346239388IPR005202Transcription factor GRAS
PfamPF035141.9E-15307388IPR005202Transcription factor GRAS
PfamPF035142.5E-11390447IPR005202Transcription factor GRAS
PfamPF035144.0E-18449529IPR005202Transcription factor GRAS
PROSITE profilePS509858.834450510IPR005202Transcription factor GRAS
PROSITE profilePS5098520.079814989IPR005202Transcription factor GRAS
PfamPF035145.1E-23842945IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 990 aa     Download sequence    Send to blast
MAGGERRRLK GGDSAFLTDS DQFPNFENGF KFDSHSPLDF NFLDRPVLPP DMNLGAFAPS  60
SSLSPDGDSS DEGDDSFLKY VSQVLMEENL EDKACMFHDP LALQAAERSF YEVLGGQNPP  120
SRNQTHQIVD SPDDNAWSSF SDYSSYSSPS NGSSNSVNHH STIGSGSQSS TNSFDSFSKT  180
GNEAPSPVLV PNIFSDSESV LQFKRGVEEA SKFLPKATNL DERENSPKWL RGRKNLHRED  240
HELEERSRKQ SAVHLEEDED ELSEMFDRVL LCSDPKAERS YYCTGEEDCN SLQQSEHPQS  300
NAEKTRTKKS SKERLAHFFA EGLEARLAGT GTEIYTVLAS KKVSAAAMLK AYELFLAACP  360
YKMISIFFAN HMILRLAEKA KVLHIIDFAE RVEETGRRLA RYCERFNVPF EYNAIAKKWE  420
TIQIEDLKVD SNEVIAVNSM FRTVSLLCSV MNVIACEGSE RVERPETYRQ WQVRTLNAGF  480
RQLPLNQELT KKLKTKVKLG HHKDFLVDED GNWLLQGWKG RVLFASSCWI PATFRHDICK  540
RNIGKYRPQF FFNQRGTRLL DNHPFLPPDV NLGVFAQSSS LSPDGDSSDD GDSSDSFLKY  600
VSQVLMEENL EDKACMFHDP LAVQAAEKSF YDVLGGQNPT FRSEPPVHVD QVVDSPDDSW  660
SADAHNSANH QWVVDPVLVP NIFSDSESIL QFKRGVEEAS KFLPKATNLV IDLGNGTLPP  720
QSKVETQRVV VKTEKDEREN SPKWLRRRKN LHRADIELEE GRRSKLSAVD LEEDDDELSE  780
MFDKVLLCSD DKAEPSYYCT GDEDLHNGIC NTWQVYGSAH SNGEKTRIRK QSSGKEVVDF  840
GTLLIQCAQA VSADDHRTAN ELLKQIRQHS SPFGDGYQRL AHCFADGLEA RLAGTGTEIY  900
TVLASKKVSA AAMLKAYELF LAACPFKKIS AFFANHMILR LAEKATLPQP GFRPAERWET  960
IRIEDLKIDR NEAIAVNCLF RTVSLLCSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-138239441125Protein SCARECROW
5b3h_D7e-138239441125Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1742748KWLRRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.97850.0flower| inflorescence| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4428050.0AM442805.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X005019.10, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283383.10.0PREDICTED: scarecrow-like protein 33
TrEMBLA0A438G1D10.0A0A438G1D1_VITVI; Scarecrow-like protein 14
STRINGVIT_06s0004g04960.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.13e-76GRAS family protein