PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01024901001
Common NameLOC100255273, VIT_06s0004g05270
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 266aa    MW: 29692.5 Da    PI: 9.4157
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01024901001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000124365123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C + F++   L  H+++H
  GSVIVT01024901001 43 YSCSFCRREFRTAQALGGHMNVH 65
                       99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.19E-64069No hitNo description
PROSITE profilePS5015711.1774370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007520developmental stageroot development stage
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MWNKGKGRWK SHLDASSNSW EEEAFAKDAS QPFGAFIWPP RSYSCSFCRR EFRTAQALGG  60
HMNVHRRDRA RLKLQPPSPH KEISGKSMGD EDPDQICTLV CNPNPNSIHG VVASPLSPSR  120
VSVLSIQENC EELSMISSTV QEHHKGTFSC FPQSWSNSVP IRVFSIPDSK RREENPMKKR  180
KSRVHDEANS SKSDLSMSLN LVIGPGNEQT VSCKRRRTDQ IPLPFFLKGS SATRHDLKSQ  240
ITALNLDSAE GLDLELRLGD PPKVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-123865229superman protein
2l1o_A2e-123865229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4460190.0AM446019.2 Vitis vinifera contig VV78X070138.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002280553.10.0PREDICTED: transcriptional regulator SUPERMAN
TrEMBLF6GUY40.0F6GUY4_VITVI; Uncharacterized protein
STRINGVIT_06s0004g05270.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.13e-24zinc-finger protein 10