PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01024728001
Common NameVIT_06s0004g06710
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 753aa    MW: 82195.3 Da    PI: 8.1998
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01024728001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.6e-06384404526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C+ f++ G C+ Gd C +aHg
  GSVIVT01024728001 384 PCPEFRK-GSCRQGDACEYAHG 404
                        8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127961.1E-8197269IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.64E-13199278IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.857201276IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.8E-14201282IPR020683Ankyrin repeat-containing domain
SMARTSM002480.01201231IPR002110Ankyrin repeat
CDDcd002041.87E-12203276No hitNo description
PROSITE profilePS5008811.354236271IPR002110Ankyrin repeat
SMARTSM002480.0047236268IPR002110Ankyrin repeat
SMARTSM003561.0E-4379405IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.662384406IPR000571Zinc finger, CCCH-type
SMARTSM0035631414437IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.944414438IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MRASRRLIGG SELDVTGRSI PSTLSRWAVI ESLTAFSTTV TKRERGKKRE KRDLRNLDPV  60
GGVAVDDRTR GVLGLEKLKA EVKNQSLRSL NQVSIFFFSS SGVWLVVWHF CKWGLRKRLC  120
GGLTEKELSM CSGSKRKLCP TMEGEVQKQE AFCCNFSLLL ELSAANDLIG FRTAVEEEGR  180
DVDEASFWYG RRNGSKKMGF EERTPLMIAA MFGSKEVLNY ILATNRVDVN RACGSDGATA  240
LHCAVAGASA SLPEVVKLLL DASADANCVD ARGNRPGDLI APILSLTFNS RKKAVEVMLK  300
GSSSIGEAFQ RVYGTPEKKE YPVDLSLPDI KNGIYGTDEF RMYTFKVKPC SRAYSHDWTE  360
CPFVHPGENA RRRDPRKYHY SCVPCPEFRK GSCRQGDACE YAHGIFECWL HPAQYRTRLC  420
KDETGCTRRV CFFAHKPEEL RPLYASTGSA VPSPRSFSVG ASSLDMSPIS PLALGSSSVL  480
MPPTSTPPMT PSGVSSPMGG TMWQNQPNII PPNLQLSGSR LKSSLSARDM DLDVLGLESH  540
RRRQQQLMDE MAGLSSPSSW NSELNRLGGM KPTNLEDIFG SLDPTILPQL QGLSMDAAAP  600
QLHLSSSPVR GSASFGMDPS GSATAAVLNS RAAAFAKRSQ TVVPSPLSDW GSPDGKLDWG  660
IQGEELNKLR KSASFGFRSN GSSYAAQAAS VPAAADEPDV SWVQSLVKEA PSARPGQFGY  720
EEQHQYHLNS GGSEILPPWV EQLCVEQEQM VA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.89470.0bud| cell culture| flower| fruit| inflorescence| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4524030.0AM452403.2 Vitis vinifera contig VV78X075559.13, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010650895.10.0PREDICTED: zinc finger CCCH domain-containing protein 66 isoform X1
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLF6GUQ80.0F6GUQ8_VITVI; Uncharacterized protein
STRINGVIT_06s0004g06710.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein