PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01023582001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 26960.5 Da PI: 8.1005 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 30.2 | 1.1e-09 | 47 | 92 | 3 | 54 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 +kGV ++g W A+I+ + +r++lg++ ++ eAa a++ a+ kl+ GSVIVT01023582001 47 FKGVV-PQQNGHWGAQIYA------NhQRIWLGTYKSETEAAMAYDSAAIKLR 92 78885.556899****999......44**********99************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 16.858 | 46 | 101 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.21E-15 | 46 | 102 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.43E-22 | 46 | 103 | No hit | No description |
SMART | SM00380 | 2.2E-18 | 46 | 107 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.5E-16 | 47 | 101 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.8E-5 | 47 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 4.2E-12 | 166 | 211 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.22E-8 | 167 | 202 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.93E-8 | 168 | 197 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MEEEILSVIS NGGTNVIVEA SDSNSSSLPF HGSKRTKQGI SVSSGRFKGV VPQQNGHWGA 60 QIYANHQRIW LGTYKSETEA AMAYDSAAIK LRSGDNHRNF PWTNLTIQEP NFQSFFSTET 120 VVNMIKDGSY PSKFAEFLKT ESQRGETEVL SLDQVGVHRN GRFMCRLLFQ KELTPSDVGK 180 LNRLVIPKKY ATKHFPPISE SAEENEVGMN LPTKILPIST RDPVMQLHFC LNCGVNVLPN 240 AV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM449200 | 0.0 | AM449200.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X088483.4, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002276492.1 | 1e-152 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
Swissprot | Q9C688 | 2e-66 | RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
TrEMBL | F6HYI2 | 1e-150 | F6HYI2_VITVI; Uncharacterized protein | ||||
STRING | VIT_11s0037g00010.t01 | 1e-151 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP10227 | 7 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51120.1 | 9e-69 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01023582001 |