PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01023531001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB | ||||||||
Protein Properties | Length: 228aa MW: 26075.1 Da PI: 10.0033 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56 | 9.2e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv ++++G g+W++ +++ g+ R++k+c++rw +yl GSVIVT01023531001 14 KGSWTPEEDQILVSHIQRHGHGNWRALPKEAGLMRCGKSCRLRWTNYL 61 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49 | 1.4e-15 | 67 | 138 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.........................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.........................tWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+e +++++++lG++ W++Ia++++ gRt++++k++w+++l GSVIVT01023531001 67 RGNFSKEEEETIIKLHQLLGNRrvlffqfhymntdiilinsvkktklLWSAIAARLP-GRTDNEIKNFWHSHL 138 89*******************************************************.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.8E-26 | 5 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.973 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.53E-24 | 15 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.89E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 10.52 | 66 | 142 | IPR017930 | Myb domain |
SMART | SM00717 | 4.8E-13 | 66 | 140 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-13 | 67 | 138 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.91E-9 | 69 | 138 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-23 | 69 | 143 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.15E-8 | 101 | 145 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MVRTPCCESM GLKKGSWTPE EDQILVSHIQ RHGHGNWRAL PKEAGLMRCG KSCRLRWTNY 60 LRPDIKRGNF SKEEEETIIK LHQLLGNRRV LFFQFHYMNT DIILINSVKK TKLLWSAIAA 120 RLPGRTDNEI KNFWHSHLKK RLKHKLATLD TIPKCKMGDA RRSKTANMPM DPRIESPGHA 180 PILPTQLLSA TTAGSALEAD SINGSSANSC NVNDDLDKIL FYYYYYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-22 | 12 | 142 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM452187 | 1e-171 | AM452187.2 Vitis vinifera contig VV78X068453.6, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010660228.1 | 1e-136 | PREDICTED: myb-related protein Myb4 | ||||
Swissprot | Q7XBH4 | 2e-68 | MYB4_ORYSJ; Transcription factor MYB4 | ||||
TrEMBL | A0A438E8U0 | 3e-89 | A0A438E8U0_VITVI; Transcription factor MYB4 | ||||
STRING | XP_010262320.1 | 3e-75 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 5e-60 | myb domain protein 15 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01023531001 |
Publications ? help Back to Top | |||
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