PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01022143001
Common NameVIT_07s0031g00780
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family B3
Protein Properties Length: 509aa    MW: 57201.4 Da    PI: 6.9386
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01022143001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.21.5e-18140230199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+kvl++s+v++  ++ lp +f++ h  + ++++ +tledesg   ++k+i +k++    l++GW++F  +++L egD++vF+l++ ++f  
  GSVIVT01022143001 140 FVKVLVRSHVSSCFWMGLPGPFCDMHL-P-KKDVIITLEDESGAACQIKYIADKTG----LSAGWRRFSMDHKLLEGDVLVFHLVEPTSF-- 223
                        89*********************9995.3.37899***************888888....***********************9987777.. PP

                        EEEEE-S CS
                 B3  93 vvkvfrk 99 
                        +v ++r+
  GSVIVT01022143001 224 KVYIIRA 230
                        8988886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-24134231IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-20134231IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-25138229No hitNo description
SMARTSM010197.8E-21140231IPR003340B3 DNA binding domain
PROSITE profilePS5086312.407140231IPR003340B3 DNA binding domain
PfamPF023622.3E-16140230IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MGVDQNVVKQ EVEDEVFRMA SSRESRRSRE EDVTLAQLSQ TVRTFAPSTP QSLTKIKLKS  60
STRTKQKKCV EKKEKGFGIK RRRSTFKLKH EASDHSPKSA SRKRNKAAVD GSCTPLKAKT  120
SALIRAEEVQ SNLGPEFPSF VKVLVRSHVS SCFWMGLPGP FCDMHLPKKD VIITLEDESG  180
AACQIKYIAD KTGLSAGWRR FSMDHKLLEG DVLVFHLVEP TSFKVYIIRA NDLTEVDGAL  240
GLLELDTHTK NDAGKLVAVS VIADLDTVAC KSSKRKHSKS LPLVVFQKKN RKTGSIPNLM  300
QREQSENDSE GNGSEVLEGS KFFEPAVQFK DISFDNFNIL VDGLLIDSEL PEDTRAKYYE  360
LCCSQNAFLH EKIVEGLNCR LIAEIISQTV QIADALRACK LTTSRVEFTN WERTLKAFEV  420
LGMNVGFLQA RLDHLVSLAF DSEGAMYSRQ YMEVTIERAH AEDEMRDLED KLMELKAASE  480
RMDADIETLK EAVENHVIRF QEEIVAPW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.17151e-151bud| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4521800.0AM452180.2 Vitis vinifera contig VV78X221870.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019076667.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLF6H4L30.0F6H4L3_VITVI; Uncharacterized protein
STRINGVIT_07s0031g00780.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7667818
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.18e-43B3 family protein