PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01021094001
Common NameLOC100852793, VIT_10s0003g00110
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 746aa    MW: 82722.4 Da    PI: 6.6292
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01021094001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.78.3e-08233253526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C++f++ G+C  G++CkF+H 
  GSVIVT01021094001 233 ICQYFSQ-GWCVNGPNCKFMHN 253
                        6******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF161318.8E-7223261IPR032297Torus domain
SuperFamilySSF902292.75E-8228253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859228255IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-5233255IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MPSPPSDGGT HPPPPWTDHS NDAVLRGGGG RGGGDGRGLP DSAIGAAGDR RDVSRDKESK  60
GHVKHLLSGS STLGKFEAGL QSDTLAVEDG SSSFKISGLS KEQTKSCVND DHSKYPKLGY  120
HFFPYEENRN TKSAVDGKYT EAMPEKKSEI MDARNTKPFS VPGKGAAVVI PMRDVFGEEA  180
NIVQCSNKEI KQIDFQSPEE MNQRASRLAA SLLRRRSLSP TDSKDENKRP AIICQYFSQG  240
WCVNGPNCKF MHNIDSMDNT NQQIGGDVAI ATRRYESQAD KGLSEIPERT TLFCFPGRVR  300
QWENEESLTW HQYNGKHRFS SLQRDDLSYG FPADSQRFPM YKDGPRNYVS PNTEGSYPIL  360
GNRLFPEYGS FSVGSSTLAI SSKTYQTSRT LSSKATSLEG LAGKQNEFTL NDYASPVLSH  420
QPNPRVDTTL QTTNLLPSHQ SSAWGGYSFS QNAGPCVQKC VDSDTKTKFS SDDWEPSIPF  480
RPSYFSAFTD MSSARSVHDT VGDTCEEHPL GDRPYKVSCP TQGASILGSS HQRVYHDPVL  540
PGTLGPEYNA DIESIHIHDK FDQSTLDKGV YGHQRDFFTN ETEPAGSSVA ELQDSQLKEG  600
KPDGHTRVED VSDQNPRNYS DGASHEEELK MEWGKQSNAK CDDHKIDEDV QKESKALRHF  660
RFVLIDFIKD LVRPTWHRGQ LSKDAHNSIV KRSVDKVLST LEPHQIPSTE EAIHHYLSVS  720
QPKIAKLVQG YVEKHRRMNS GISVL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4566750.0AM456675.2 Vitis vinifera contig VV78X102566.12, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010655449.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1
RefseqXP_019078251.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1
RefseqXP_019078252.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1
RefseqXP_019078253.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1
RefseqXP_019078254.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1
RefseqXP_019078255.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1
RefseqXP_019078256.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1
RefseqXP_019078257.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1
RefseqXP_019078258.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1
RefseqXP_019078259.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1
RefseqXP_019078260.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1
RefseqXP_019078261.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1
TrEMBLA0A438DR530.0A0A438DR53_VITVI; Protein FRIGIDA-essential 1
STRINGVIT_10s0003g00110.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP728179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-33C3H family protein