PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01021060001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 448aa    MW: 50000.9 Da    PI: 9.6558
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01021060001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.75.9e-18286334355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        ++GVr+++ +g+WvAeIr p++   r+r++lg+f+ta+eAa a++ a+  l+g
  GSVIVT01021060001 286 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAQEAAFAYDTAAYILRG 334
                        8******9.**********955...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.15E-29284344No hitNo description
Gene3DG3DSA:3.30.730.102.3E-30285343IPR001471AP2/ERF domain
PROSITE profilePS5103221.878285342IPR001471AP2/ERF domain
SMARTSM003806.6E-34285348IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-21285342IPR016177DNA-binding domain
PRINTSPR003674.2E-10286297IPR001471AP2/ERF domain
PfamPF008475.1E-11286333IPR001471AP2/ERF domain
PRINTSPR003674.2E-10308324IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MQKKFTDPCP SHLKPLKTSK TKKIWLPRMR GEPQFLHCII SVPFFVFLVY HSKFIRTSME  60
DQFPKMQTFL RKELPSYFQG PVGSRFFGDA TIWDGLAESA SCNHVTGSNV KLSSSSPDSL  120
FSSSESTSSV DEASASNLVK NMPEFTREDP LQTQHGVPFF SGSNSVNLSG ASSTSDVNQR  180
FIPEPSTVVI DPSTQIANSL GRNEKCEPMS SCPLFPTPQL SQSQHLPGFE WLKINQSLAN  240
HPSKGLSDYW LSTTKTQPMK YTGRRMLNHQ QKTSLSSSAS SPGKLFRGVR QRHWGKWVAE  300
IRLPRNRTRV WLGTFDTAQE AAFAYDTAAY ILRGDYAHLN FPELKHQLKA NSTNGTTAAL  360
LEAKLQAISK GISAHKEPIA PPPPPSPKQH YLPYDNSKVA KAIVENKKIQ EVVLDMDGVQ  420
LSRMPSLDMD AIWDAILNND LFFQLMM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19281352168ATERF1
3gcc_A1e-19281352168ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.88390.0fruit| pedicel
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4855910.0AM485591.2 Vitis vinifera contig VV78X161125.24, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010650343.10.0PREDICTED: ethylene-responsive transcription factor ERF062 isoform X2
TrEMBLF6GWG10.0F6GWG1_VITVI; Uncharacterized protein
STRINGVIT_05s0029g00140.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1128257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.14e-71ERF family protein