PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01021032001
Common NameVIT_05s0029g00390
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 458aa    MW: 49733.1 Da    PI: 8.4582
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01021032001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.2e-09273320455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  GSVIVT01021032001 273 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 320
                        8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.96E-11267324No hitNo description
SuperFamilySSF474592.36E-17267339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663269319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-17269337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-6273320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10275325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MEIQSNELNC SSQAVQNCFL NPNWDNSMDQ SDPFESALSS IVSSPVGSSG HGNTNNSNNT  60
SCYNTPLNSP PKLNLSIMDH QQHQIRTNFP TNHLPTHPSL APFPADPGFA ERAARFSCFG  120
TGNFSGLSAQ FGLNDTELPY RSSTGWKLGD SREESSVSEQ IPGGETSLKG QNDANGRKRK  180
SIPRGKAKEV PSSPSAKDAK VASDKDESNA KRSKPDEGSG SEKDAAKAKA EANGSTKSAG  240
DGNQKQSKDN PKPPEAPKDY IHVRARRGQA TDSHSLAERV RREKISERMK FLQDLVPGCN  300
KVTGKAVMLD EIINYVQSLQ RQVEFLSMKL ATVNPRMDFN MEALLSKEIF QSRGSLPQAM  360
YPLDSSALAF PYGYQPQQGP SLQNGIPNGT ETPFSVNPLN SAIRRTSSML PSIDGFGEAA  420
SQVSTFWEDE LHSVVQMGIG QNQPQGFPGK KNKRLPR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4235291e-160AM423529.2 Vitis vinifera contig VV78X197056.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002264969.20.0PREDICTED: transcription factor bHLH77
TrEMBLF6GWE70.0F6GWE7_VITVI; Uncharacterized protein
STRINGVIT_05s0029g00390.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.16e-81bHLH family protein