PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01020834001 | ||||||||
Common Name | LOC100259242, VIT_12s0028g00860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | NAC | ||||||||
Protein Properties | Length: 299aa MW: 34198.3 Da PI: 8.4111 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.2 | 9.3e-51 | 21 | 149 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrFhPtdeelv +yL++kve+k+++l e ik+vdiyk++PwdLp +++ +++ewyfF+ r +ky+++ r+nr+t sg+Wkatg dk++ GSVIVT01020834001 21 LPGFRFHPTDEELVGFYLRRKVEKKPISL-ELIKQVDIYKYDPWDLPrVSTNMGDREWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPI 111 69***************************.99***************657777999************************************ PP NAM 93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +s ++e +glkk+Lv+y+g+a kg+ktdW+mhe+rl GSVIVT01020834001 112 YSVeaTNECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 149 *98667777***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.22E-55 | 19 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.219 | 20 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-25 | 22 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005992 | Biological Process | trehalose biosynthetic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006561 | Biological Process | proline biosynthetic process | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010120 | Biological Process | camalexin biosynthetic process | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MEVEKTSTLD NKKDDDEEVV LPGFRFHPTD EELVGFYLRR KVEKKPISLE LIKQVDIYKY 60 DPWDLPRVST NMGDREWYFF CIRGRKYRNS IRPNRVTGSG FWKATGIDKP IYSVEATNEC 120 IGLKKSLVYY RGSAGKGTKT DWMMHEFRLP PGGKGTYFPN AKNVTQEAEV WTLCRIFKRS 180 PTYRKYTPEG KGSISNKQVA TDSSSKTCSL ESDNNDKYLS FENSTTRTKN STVVDSSIDE 240 RSQLVVGQMS SFVSPYSGPY SSFWNPNGND QFFTSGNWDE LRSIVESAID PPHVYDCR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-48 | 22 | 185 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-48 | 22 | 185 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-48 | 22 | 185 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-48 | 22 | 185 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-48 | 22 | 185 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-48 | 22 | 185 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-48 | 22 | 185 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-48 | 22 | 185 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-48 | 22 | 185 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-48 | 22 | 185 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-48 | 22 | 185 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-48 | 22 | 185 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-48 | 22 | 185 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-48 | 22 | 185 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.11367 | 0.0 | bud| cell culture| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00310 | DAP | Transfer from AT2G43000 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM450437 | 0.0 | AM450437.2 Vitis vinifera contig VV78X104935.5, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002283251.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1 | ||||
Swissprot | Q9SK55 | 1e-96 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | E0CU17 | 0.0 | E0CU17_VITVI; Uncharacterized protein | ||||
STRING | VIT_12s0028g00860.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 5e-99 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01020834001 |
Entrez Gene | 100259242 |