PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01020584001 | ||||||||
Common Name | LOC100242144, VIT_12s0028g03270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | ERF | ||||||||
Protein Properties | Length: 212aa MW: 22854.5 Da PI: 7.185 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.5 | 5.2e-21 | 16 | 66 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr ++ +gr++AeIrdp++ + r++lg+f+taeeAa+a++aa+++++g GSVIVT01020584001 16 PHFRGVRKRP-WGRYAAEIRDPTK---KSRVWLGTFDTAEEAAQAYDAAAREFRG 66 689*******.**********864...6************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.00E-18 | 16 | 74 | No hit | No description |
Pfam | PF00847 | 3.4E-14 | 16 | 66 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.0E-39 | 17 | 80 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-32 | 17 | 74 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.788 | 17 | 74 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-22 | 17 | 75 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.4E-11 | 18 | 29 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.4E-11 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MALKEKVKEG VKAKEPHFRG VRKRPWGRYA AEIRDPTKKS RVWLGTFDTA EEAAQAYDAA 60 AREFRGSKAK TNFPLPNEVL PFPNTDNLTR SPSPSSTVES SSPHAPLELD LTRRLGSSDG 120 GFPFHYQPHV VNSAAVAGVW PHARPVLFLD AFVGAEGFRV NPVTVAYDGG FGSPVQSESD 180 SSSVVDSVQH ESSGATRVLG LDLNFPPPLE A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-23 | 13 | 75 | 1 | 64 | ATERF1 |
3gcc_A | 5e-23 | 13 | 75 | 1 | 64 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.9709 | 0.0 | bud| flower| fruit| inflorescence| leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, mostly in root tip, lateral root tips, cortex and vascular tissues. {ECO:0000269|PubMed:10945353}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ378171 | 0.0 | FQ378171.1 Vitis vinifera clone SS0AEB14YG06. | |||
GenBank | FQ378476 | 0.0 | FQ378476.1 Vitis vinifera clone SS0AEB13YH09. | |||
GenBank | FQ379361 | 0.0 | FQ379361.1 Vitis vinifera clone SS0AEB10YK18. | |||
GenBank | FQ379781 | 0.0 | FQ379781.1 Vitis vinifera clone SS0AEA1YG11. | |||
GenBank | FQ385310 | 0.0 | FQ385310.1 Vitis vinifera clone SS0AEB32YK13. | |||
GenBank | FQ387735 | 0.0 | FQ387735.1 Vitis vinifera clone SS0AEB25YI01. | |||
GenBank | FQ389098 | 0.0 | FQ389098.1 Vitis vinifera clone SS0AEB20YN14. | |||
GenBank | FQ389798 | 0.0 | FQ389798.1 Vitis vinifera clone SS0AEB19YK07. | |||
GenBank | FQ395260 | 0.0 | FQ395260.1 Vitis vinifera clone SS0AFA16YN01. | |||
GenBank | FQ395370 | 0.0 | FQ395370.1 Vitis vinifera clone SS0AFA16YE10. | |||
GenBank | FQ395932 | 0.0 | FQ395932.1 Vitis vinifera clone SS0AFA12YP21. | |||
GenBank | FQ397793 | 0.0 | FQ397793.1 Vitis vinifera clone SS0AEB5YK17. | |||
GenBank | FQ397975 | 0.0 | FQ397975.1 Vitis vinifera clone SS0AEB5YB20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002276215.1 | 1e-152 | PREDICTED: ethylene-responsive transcription factor 4 | ||||
Swissprot | Q9LW49 | 1e-53 | ERF4_NICSY; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | E0CTG9 | 1e-151 | E0CTG9_VITVI; Uncharacterized protein | ||||
STRING | VIT_12s0028g03270.t01 | 1e-152 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 1e-25 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01020584001 |
Entrez Gene | 100242144 |