PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01020561001 | ||||||||
Common Name | VIT_12s0028g03550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | bHLH | ||||||||
Protein Properties | Length: 216aa MW: 24156.1 Da PI: 5.3741 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.2 | 4.6e-11 | 23 | 72 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 +++E++RR+ +++ +++L +llP + +sk s + + +Av YIksLq GSVIVT01020561001 23 ERKIVEKNRRNLMKNLYSKLNSLLPDQ---SSKEaQSIPDQVDEAVSYIKSLQ 72 5789**********************8...56666*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.109 | 19 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-11 | 21 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.69E-5 | 21 | 76 | No hit | No description |
SuperFamily | SSF47459 | 5.23E-11 | 21 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-7 | 23 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0023 | 25 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0090575 | Cellular Component | RNA polymerase II transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MGFGKREDNM ESTSHSSSVS KAERKIVEKN RRNLMKNLYS KLNSLLPDQS SKEAQSIPDQ 60 VDEAVSYIKS LQGNLEKLKE KKESLMSSRK RPHTCSTTSV GETSTPSLRS PVMEIREMGS 120 NLQVTLVTGL EDQSIFYDII GILHEESAEV LSASFSVVGN SAFHVLIAQV GDSTFSFGTK 180 WICDRLNKFV HGSTSEEELQ PELWDFEFHP ETWAF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.21576 | 0.0 | flower |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM429367 | 0.0 | AM429367.2 Vitis vinifera contig VV78X063574.2, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002274262.2 | 1e-158 | PREDICTED: transcription factor bHLH36 | ||||
TrEMBL | A0A438JKH3 | 1e-156 | A0A438JKH3_VITVI; Transcription factor bHLH162 | ||||
STRING | VIT_12s0028g03550.t01 | 1e-150 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1345 | 11 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 6e-27 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01020561001 |